Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"

Implementation of Geometric Vector Perceptron, a simple circuit for 3d rotation equivariance for learning over large biomolecules, in Pytorch. Idea proposed and accepted at ICLR 2021

MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories

MDToolbox.jl: A Julia package for molecular dynamics trajectories analysis and modeling of biomolecules

A bare metal Python library for building and manipulating protein molecular structures

ManifoldEM Python suite

Solvent Accessible Surface Areas of Biomolecules and their Complexes

Software implementation for paper Heuristic Analysis of Manifolds from Simulated Cryo-EM Ensemble Data

ABC-Laboratory is a prototypical simulation software calculating the fluorescence or absorption of different 'biomolecules'. It uses the Godot Game Engive (v.3) and is the result of my Bachelor Hands-on / internship.

Companion Jupyter Notebook for "Self-Assembly of a Dimer System"

Reveal protein energy centers.

KSN.1 = Kumar Syntax Nomenclature.1

A library of features describing single molecules (especially proteins)

AR.js based augmented reality application with a model directly from Pymol