A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
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Updated
Dec 20, 2024 - Jupyter Notebook
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
🌺 reference-free transcriptome assembly for short and long reads
integrated RNA-seq Analysis Pipeline
a fully Bayesian approach to deconvolve tumor microenvironment
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Workflow management with Nextflow and nf-core
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
GenoCraft: A Comprehensive, User-Friendly Web Platform for High-Throughput Omics Data Analysis and Visualization (https://arxiv.org/pdf/2312.14249)
a web-based R shiny application that wraps DESeq2 R package
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
"Applied bioinformatics" is a course for Genetics Master Program at Genetics Department
Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
Trajectory Inference of clinical data via Multi-commodity Flow
Analysis pipeline for bulk RNA-seq data
A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
bulk RNA-seq of miRNA and mRNA profiling of human acute and chronic wounds
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