Reference-guided transcript discovery and quantification for long read RNA-Seq data

Technology agnostic long read analysis pipeline for transcriptomes

integrated RNA-seq Analysis Pipeline

SCASA: Single cell transcript quantification tool

🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.

Joint modeling of multiple RNA-seq samples for accurate isoform quantification

A pipeline for running rsem analysis on thousands of samples