Fast and accurate de novo assembler for long reads

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Long read based human genomic structural variation detection with cuteSV

Nanopore sequence read simulator

PEPPER-Margin-DeepVariant

CLI tool for flexible and fast adaptive sampling on ONT sequencers

Technology agnostic long read analysis pipeline for transcriptomes

Assembly and intrahost/low-frequency variant calling for viral samples

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

A Python library to visualize and analyze long-read transcriptomes

⛏ HLA predictions from NGS shotgun data

De novo clustering of long transcript reads into genes

A versatile compressor of third generation sequencing reads.

Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

Nanopore data analysis in R

Predict plasmids from uncorrected long read data

A pipeline for high-quality bacterial genome construction using ONT sequencing

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.