extrachromosomal-circular-dna

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nf-core / circdna

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

workflow pipeline genomics nextflow dna circular nf-core extrachromosomal-circular-dna eccdna ecdna ampliconarchitect circle-seq ampliconsuite

Updated Dec 20, 2024
Python

stjude / Episomizer

Star

Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data

genomics graph-algorithms next-generation-sequencing episome double-minutes simple-cycles extrachromosomal-circular-dna

Updated Sep 29, 2018
Python

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