fiji
ImageJ is an open source Java image processing program inspired by NIH Image.
It runs on any computer with a Java 1.8 or later virtual machine.
Downloadable distributions are available for Windows, Mac OS X and Linux.
ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Here are 143 public repositories matching this topic...
providing a Plug-In for Fiji / ImageJ for segmenting images, too large to process in RAM at once as well as several other tools for image segmentation & processing.
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Nov 15, 2016 - Java
ImageJ macros that automate the workflow of thresholding and analyzing the size and intensity of objects/regions in microscope images.
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Mar 24, 2017
Automated tracking and interactive visualization/simulation of select cellular processes
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May 2, 2017
This is an easy to use active contours api for Fiji(ImageJ).
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Jun 19, 2017 - Java
Block-Diagram (XML) model of an application-level ImageJ program and an intrinsic visual editor for defining, loading, editing, and running such models
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Jun 23, 2017
Masking an image locally, based on mouse-defined 'seed points' and selecting connected areas including the seed points. Two-level thresholding provides noise-robustness.
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Jun 30, 2017
ImageJ scripts for stereology and morphometry
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Jul 19, 2017 - Python
This plugin segments and classify diffusion trajectories
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Oct 9, 2017 - Java
A short macro to generate an image with randomly positioned "fluorescent" single molecules
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Nov 13, 2017
ImageJ / Fiji macro to automatically correct white balance in RGB images
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Nov 13, 2017
ImageJ plugin to read xrm files.
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Nov 14, 2017 - Java
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
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Nov 20, 2017 - Python
Non local means filter for ImageJ
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Dec 3, 2017 - Java
Maximum of Laplacian of Gaussian filters (imageJ plugin)
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Dec 20, 2017 - Java
ObjCounter ImageJ plugin for object segmentation and counting
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Dec 20, 2017 - Java
ImageJ macro for calculation of nuclear to cytoplasmic ratio
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Mar 1, 2018
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