One-step to Cluster and Visualize Gene Expression Matrix

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Bulk Rna-seq Analysis

Jose V. Die

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

Interactive R package to quantify, analyse and visualise alternative splicing

Material, scripts and datasets for the MolBioMed Bioinformatics Class

This repository contains the python package for Helical

Source code of the Java Bgee applications

A powerful abstraction of gene databases

The Cytocraft package provides 3D reconstruction of spatial configuration of transcription centers

CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.

Python3 binding to mRMR Feature Selection algorithm (currently not maintained)

Enables Gene Ontology (and other feature annotation) enrichment calculations and comparisons between feature sets.

A workflow based on QTLtools to run cis- and trans-QTL analyses.

Source code of the Bgee pipeline used to build the Bgee database

Testing how to use Jekyll and GitHub Pages to make a webiste.

A repository for the Playbook Workflow Builder project.

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.