Gene Set Enrichment Analysis and Over Representation Analysis analysis using R
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Jun 20, 2019
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gene-set-enrichment-analysis
Here are 9 public repositories matching this topic...
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last…
bam-files rna-seq r script deseq2 rna-seq-analysis kegg wikipathways reactome ora geneontology gsea rna-seq-pipeline reactome-pathway differentially-expressed-genes clusterprofiler deseq2-analysis gene-set-enrichment-analysis diseaseontology over-rapresentation-analysis
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Apr 14, 2023 - Jupyter Notebook
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
gene-sets r shiny gene-expression enrichment-analysis gene-expression-signatures gsea pathway-enrichment-analysis gene-set-enrichment-analysis
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Oct 18, 2023 - HTML
Role of CXCL9/10/11, CXCL13 and XCL1 in recruitment and suppression of cytotoxic T cells in renal cell carcinoma
cancer monte-carlo-simulation metabolism transcriptome renal immune tcell semi-supervised-clustering tumor-immunogenicity gene-set-enrichment-analysis immune-checkpoint
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Mar 20, 2023 - R
Snakemake pipeline to benchmark 11 functional pathway annotation systems
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Jun 30, 2022 - Python
Assessing the effectiveness of endocrine therapy in breast cancer using RNAseq data
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Apr 19, 2022 - R
Gene set enrichment analysis from scRNA seq data : in search of the original tissue
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Apr 19, 2022 - R
Expression, biological and clinical relevance of the collagen pathway genes in prostate carcinoma
survival-analysis signaling-pathways collagen differential-gene-expression metabolic-models prostate-cancer semi-supervised-clustering gradient-boosted-machines gene-ontology-terms gene-set-enrichment-analysis
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Feb 26, 2024 - R
The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.
bioinformatics rna-seq r cancer gene-expression gene-ontology edger limma gsea multidimensional-scaling gene-set-enrichment-analysis tasmanian-devil edaseq
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Aug 6, 2024 - TeX
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