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genotype-data

Here are 12 public repositories matching this topic...

zhaofengli / snappy

Helps you browse through and interpret your genotype data

snpedia 23andme genotype-data ancestrydna

Updated Jan 29, 2023
JavaScript

sigven / vcf2tsvpy

Genomic VCF to tab-separated values

tsv conversion vcf vcf-data variant-annotations variant-filtration genotype-data tab-separated

Updated Mar 9, 2023
Python

cibiobcg / EthSEQ

Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data

ethnicity-analysis exome-sequencing genotype-data

Updated Mar 18, 2023
R

gwas-tips

esohkevin / gwas-tips

tips and tricks in genome-wide association studies - a tutorial

gwas thesis plink admixture vcftools genotype-data gwas-dataset gwas-pipeline snptest gwas-tools impute2 qctool shapeit2 chromopainter finestructure

Updated Jul 25, 2023

poseidon-framework / poseidon-hs

A toolset to work with modular genotype databases in the Poseidon format

haskell research-data genotype-data ancient-dna

Updated Dec 19, 2024
Haskell

poseidon-framework / poseidon-framework.github.io

Main landing page for getting information about the Poseidon project

documentation research-data genotype-data ancient-dna

Updated Dec 3, 2024
TeX

bguo068 / ishare

a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.

genotype-data identity-by-descent rare-variant-sharing-analysis tabular-encoding ancestry-specific-ibd

Updated Aug 23, 2024
Rust

mr-eyes / genoFreq

summarize and visualize the genotypes categories per sample in a VCF file

bioinformatics vcf variant-calling genotype vcftools genotype-data bioinformatics-tool bioinformatics-visualization

Updated Jul 11, 2019
C++

nevrome / paagen

Experiments with the genotype data generators in xerxes

haskell bioinformatics genotype-data ancient-dna

Updated Aug 21, 2022
R

jbradach / dna

Raw data from 23andMe's genotyping of James Bradach's DNA

dna dna-sequences 23andme genotype-data

Updated Jul 9, 2020

epsalazarf / aDNAxRefPanel

A pipeline to merge ancient DNA sequencing data with modern genotyping data

bioinformatics population-genetics ancient-dna-sequences genotype-data human-genetics

Updated Feb 20, 2019
Perl

mode1990 / Genotype_Imputation_hardcall

This short script facilitates the conversion of binary genotypes to VCF format, followed by chromosome-specific splitting for subsequent imputation using Minimac4. It then performs a hard-call to select high-quality imputed SNPs, generating a new binary dataset

imputation genotype-data

Updated Jun 27, 2024

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