Python library to access Gene Expression Omnibus Database (GEO)
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Updated
Jul 27, 2024 - Jupyter Notebook
Python library to access Gene Expression Omnibus Database (GEO)
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
nim wrapper for htslib for parsing genomics data files
Sequence alignment tools
Infer metadata for your downstream analysis straight from your RNA-seq data
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Processing, quality control and analysis of GAM datsets
Find and visualize rearrangements in DNA sequences
vSNP -- validate SNPs
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Sargasso disambiguates mixed-species high-throughput sequencing data.
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
This package identifies differential expression in high-throughput 'count' data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.
Barcode Generator
Resolution-independent normalization of Hi-C data
basepair bio: a single binary with many useful genomics subtools.
Comparison of gene usage in immune repertoires under different biological conditions
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