CDCgov / seqsender Star 32 Code Issues Pull requests Discussions Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories bioinformatics-pipeline genbank ncbi-submission ncbi-genbank cdc sra ncbi-sra ncbi-biosamples gisaid gisaid-uploader biosample gisaid-format gisaid-upload seqsender ncird ncird-id cdc-influenza-division Updated Jun 17, 2024 Python
CDCgov / editMSA Star 1 Code Issues Pull requests A collection of scripts for editing and manipulating multiple sequence alignment files. ncird-id cdc-influenza-division Updated May 20, 2024 Perl
CDCgov / ifx-convert Star 0 Code Issues Pull requests converter conversion file-format ncird-id cdc-influenza-division Updated Jul 29, 2024
CDCgov / app-squared Star 0 Code Issues Pull requests Discussions Protein analysis pipeline for characterizing influenza antigenic drift ncird ncird-id Updated Jul 26, 2024 Python
CDCgov / udf-bioutils Star 0 Code Issues Pull requests Bioinformatics related user-defined functions for Cloudera Impala. bioinformatics analytics impala-sql ncird-id cdc-influenza-division Updated Jul 19, 2024 C++