Nextflow pipeline to assemble genomes from long reads.

Meiotic Recombination Detection Pipeline with PacBio HiFi sequencing reads

Adapter+Barcode trimming from Pacbio HiFi reads

Variant calling pipeline for Pacbio Hifi reads

A Nextflow pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.

trimmomatic for long reads

pacbiohifi read analyzer using recursion

profiling pacbiokmers and filtering pacbio kmers

multipattern trimmomatic for long reads

streaming visualization of pacbiohifi reads

pacbio/oxford nanopore long reads repeat coverage estimation

Scripts for de-novo genome assembly, assembly polishing, QC and post-assemble analyses of HiFi whole genome sequence data and downstream pangenomics analyses to identify structural variants

a streamlit application for graphical analyisis of pacbiohifi reads

codegetter for illumina, pacbio and oxford long read and short reads

polyATGC pacbio/oxford nanopore estimator