PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
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Oct 9, 2024 - Python
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phylodynamics
Here are 16 public repositories matching this topic...
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
england paper insights transmission epidemiology bayesian-inference phylodynamics genetic-data sarscov2
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Mar 30, 2021 - HTML
Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"
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Mar 21, 2022 - R
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
bioinformatics virus phylogenetics phylogeography epidemiology virology phylodynamics venezuelan-equine-encephalitis-virus
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Jan 11, 2023
Tracking the spread of Foot-and-Mouth Disease virus in South America
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Nov 29, 2022 - Jupyter Notebook
My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018
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Mar 6, 2020 - TeX
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
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Jan 10, 2023
Example for BEAST v2.5 paper
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Feb 15, 2019 - Python
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May 9, 2017 - MATLAB
Plague Global Phylogeny Manuscript
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Jun 17, 2021 - HTML
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
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Nov 25, 2022
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Dec 13, 2024 - Python
my second year poster for the Graduate School Poster Day 2016
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Nov 3, 2016 - TeX
phylogenetics population agent-based-modeling population-genetics molecular-evolution phylodynamics agent-based-simulation
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Sep 14, 2015 - TeX
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