Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
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Updated
Jul 16, 2024 - C++
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
Open-source usearch
Protein Alignment and Detection Interface
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
Pipeline plugins for PALADIN, providing HPC support, abundance (taxonomy, go terms), customized reports, etc
Protein alignment using gap penalty traceback with the Blosum62 Matrix
Flexible protein alignment using Protein Units
FASTA Alignment search for BsaI and BsmBI restriction sites in the ORF6 protein to verify assertions made by Bruttel, et. al. in "Endonuclease fingerprint indicates a synthetic origin of SARS-CoV-2."
MutFold | Human breast cancer associated mutant protein structure prediction and alignment application
Implementation of the Combinatorial Extension (cealign) algorithm to align protein structures
Benchmark the performance of sequence alignment workflows
For viewing, analyzing, and generating figures of protein sequence alignments.
stitching coding regions from exon alignments for the protein to genome alignments.
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