SaprotHub: Making Protein Modeling Accessible to All Biologists
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Updated
Jul 31, 2024 - Jupyter Notebook
SaprotHub: Making Protein Modeling Accessible to All Biologists
Incorporating Triplet Error for Predicting PPIs using Deep Learning
A predictor of GPCR couplings with G-proteins/B-arrs using Transformers
A web interface for ontology-based protein network visualization.
Dataset and package for working with protein-protein interactions in 3D
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
Working with biological data in flutter.
A tool to predict protein functions (Gene Ontology) via protein-protein and ontology networks
Flask-based python server using REST API that provides functionality for the biocentral frontend.
A method designed for proteome-scale sequence-based evaluation of protein-protein interfaces as defined by structural models of protein-protein interaction complexes.
interpro to graphs for analyzing domains.
Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.
Molecular biology experiments, mass spectrometry-based proteomics, and reproducible data analysis in R
Tool to design cyclic peptides that mimic proteins and target their binding partners.
Code to accompany the paper: ”ProteinNetworkSight efficiently transforms co-expressed protein lists into interactive networks and offers suggestions for their modifications”
Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
The repository contains all the code for the paper amino acid encoding using deep learning application
Webpage of the HADDOCK group
Scipion framework plugin for the use of tools provided in the Rosetta software suite. Currently it has protocols for the use of the Rosetta DARC docking software
Bioinformatic tool to predict structural protein-protein interfaces
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