rna-seq
Here are 1,143 public repositories matching this topic...
High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation
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Jul 5, 2024 - Shell
Automated pipelines for RNAseq data analysis using nextflow and singularity.
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Jul 5, 2024 - Nextflow
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
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Jul 5, 2024 - Python
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Jul 5, 2024 - R
This repository contains the python package for Helical
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Jul 5, 2024 - Python
Visual self-service analytics platform for big omics data.
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Jul 5, 2024 - R
An R package for utilities to guide in-depth detection of circadian signals from omics time series data
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Jul 5, 2024 - Jupyter Notebook
The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.
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Jul 5, 2024 - Python
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
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Jul 4, 2024 - Python
A Nextflow pipeline to perform quality control, alignment, and quantification of RNA sequencing data.
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Jul 4, 2024 - Nextflow
Repository for method to analyse the relationship between germline variants and somatic mutations and alternative splicing in breast cancer patients based on RNA-Seq data,
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Jul 4, 2024 - Python
SegPore is a software to segment the raw Nanopore direct RNA sequence, and to estimate various RNA modifications and secondary folding structures.
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Jul 4, 2024 - Python
Analyse RNA feature distributions.
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Jul 3, 2024 - Jupyter Notebook
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
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Jul 3, 2024 - Python
Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.
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Jul 3, 2024 - Python
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
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Jul 4, 2024 - Python
Table of software for the analysis of single-cell RNA-seq data.
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Jul 6, 2024 - R
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
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Jul 2, 2024 - Java
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