LLM for Drug Editing, ICLR 2024

RiboNucleic Acid (RNA) Language Model

Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

Deep learning to solve RNA design puzzles

State-of-the-art ab initio prediction of 1D protein structure annotations

Researching the forward-backward algorithm

Parallel solution for local RNA secondary structure analysis

Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server

CB513 datasets for Protein Secondary Structure Prediction

Cartoon mesh generation for secondary structure of proteins in C++

Interactive visualization of cotranscriptional folding

State of the art software for RNA sequence design. The first to solve the Eterna benchmark!

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…

Simplified DSSP algorithm implemented in Julia

Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification

RNA/DNA secondary structure library for processing it as a graph, reading and writing

A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.

Python application to compare ssNa secondary structures

Protein Secondary Structure Analysis and Visualization for Trajectories

Unsafe low-level Rust bindings for the ViennaRNA package.