User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Interactive software tool for the assignment of cell types in single-cell studies.

simplified cellranger for long-read data

Single-cell identity definition using random forest modelling and recursive feature elimination

Deep Unsupervised Single-cell Clustering (DUSC) is a hybrid approach for cell type discovery in scRNA-seq data.

Single-Cell RNA-seq analysis workflow for 10x Genomics data

Original scripts for the manuscript "Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus", Brivio et al. Cell Reports, 2023

Implementing GANs in the sc-RNA-Seq pipeline

This repository contains the code and data for the recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

Optimización del protocolo de Xiao et al. para el análisis de scRNA-seq en R.

This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.

sc-RNA-seq data analysis of cardiac development in zebrafish

In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.

scRNA analysis pipeline

My final project of the Master's in Bioinformatics and Computational Biology.