Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Support Omnipose. #8

Merged
merged 37 commits into from
Nov 6, 2023
Merged

Support Omnipose. #8

merged 37 commits into from
Nov 6, 2023

Commits on Jul 7, 2023

  1. Configuration menu
    Copy the full SHA
    55ce9c2 View commit details
    Browse the repository at this point in the history
  2. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    1863b94 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    1ba5a6c View commit details
    Browse the repository at this point in the history
  4. Changing the CellposeDetectorFactory class as OmniposeDetectorFactory…

    … class
    
    Adapting variable names
    Adapting comments
    Changing file name
    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    af4a174 View commit details
    Browse the repository at this point in the history
  5. Changing filename

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    1f6fc22 View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    9b445da View commit details
    Browse the repository at this point in the history
  7. Changing file name

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    02a8e2d View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    0ace180 View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    d8c24e3 View commit details
    Browse the repository at this point in the history
  10. Configuration menu
    Copy the full SHA
    56d58e9 View commit details
    Browse the repository at this point in the history
  11. Configuration menu
    Copy the full SHA
    410f550 View commit details
    Browse the repository at this point in the history
  12. Configuration menu
    Copy the full SHA
    f3fae6c View commit details
    Browse the repository at this point in the history
  13. Adapting comments

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    650a784 View commit details
    Browse the repository at this point in the history
  14. Configuration menu
    Copy the full SHA
    0de1a20 View commit details
    Browse the repository at this point in the history
  15. Configuration menu
    Copy the full SHA
    8a6f549 View commit details
    Browse the repository at this point in the history
  16. Configuration menu
    Copy the full SHA
    f2fa314 View commit details
    Browse the repository at this point in the history
  17. Changing pom file

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    f1a14ce View commit details
    Browse the repository at this point in the history
  18. Removing cyto2 from pretrained model keys since it was associated to …

    …cellpose cyto2 and not omnipose cyto2 model
    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    e7d4d0e View commit details
    Browse the repository at this point in the history
  19. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    19cbb29 View commit details
    Browse the repository at this point in the history
  20. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    cde8757 View commit details
    Browse the repository at this point in the history
  21. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    d24fb5f View commit details
    Browse the repository at this point in the history
  22. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    54ae11c View commit details
    Browse the repository at this point in the history
  23. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    895d579 View commit details
    Browse the repository at this point in the history
  24. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    421ea71 View commit details
    Browse the repository at this point in the history
  25. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    c75b76e View commit details
    Browse the repository at this point in the history
  26. Update README.md

    Adding example video
    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    d171a21 View commit details
    Browse the repository at this point in the history
  27. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    673a0d3 View commit details
    Browse the repository at this point in the history
  28. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    d135190 View commit details
    Browse the repository at this point in the history
  29. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    5c6c323 View commit details
    Browse the repository at this point in the history
  30. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    d698f57 View commit details
    Browse the repository at this point in the history
  31. Update README.md

    marieanselmet committed Jul 7, 2023
    Configuration menu
    Copy the full SHA
    83adc86 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2023

  1. Update README.md

    marieanselmet committed Jul 9, 2023
    Configuration menu
    Copy the full SHA
    3a06978 View commit details
    Browse the repository at this point in the history
  2. Update README.md

    marieanselmet committed Jul 9, 2023
    Configuration menu
    Copy the full SHA
    f369292 View commit details
    Browse the repository at this point in the history

Commits on Jul 17, 2023

  1. Configuration menu
    Copy the full SHA
    c08ffbc View commit details
    Browse the repository at this point in the history
  2. Considerably reduce duplicate code between cellpose and omnipose.

    - CellposeSettings and OmniposeSettings inherit from an abstract class
    that does everything except the model.
    - Models for omnipose and cellpose are 2 separate enums, but that
    implement a common interface.
    - OmniposeUtils merged with CellposeUtils.
    - CellposeDetector becomes an omnipose detector when provided with an
    OmniposeSettings. No need for a second OmniposeDetector class.
    - The detector factory and config panel classes for omnipose inherit
    from their cellpose counterparts.
    
    Fix #7
    tinevez committed Jul 17, 2023
    Configuration menu
    Copy the full SHA
    a74259b View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    508a09f View commit details
    Browse the repository at this point in the history

Commits on Jul 24, 2023

  1. Update README.md

    Adding docu in the README
    marieanselmet committed Jul 24, 2023
    Configuration menu
    Copy the full SHA
    7b68336 View commit details
    Browse the repository at this point in the history