Merge branch 'master' of github.com:veg/BioExt

.github/workflows/python-package.yml

@@ -0,0 +1,34 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: Python package
+
+on:
+  push:
+    branches: [ "master" ]
+  pull_request:
+    branches: [ "master" ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.10","3.11","3.12"]
+
+    steps:
+    - uses: actions/checkout@v3
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install flake8 nose pytest numpy biopython cython setuptools
+        python setup.py install
+    - name: Test with pytest
+      run: |
+        pytest tests/*

requirements.txt

@@ -1,3 +1,4 @@
 Cython>=0.28
 numpy>=1.14
 joblib
+biopython