docs: update readme

virtool · Jan 23, 2024 · 9ed3199 · 9ed3199
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 # workflow-iimi
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+**This workflow is experimental**.
+
+An analysis workflow for detecting known OTUs (viruses) using read mapping and ML.
+
+## Steps
+
+1. **Build all-OTU index**. Build a Bowtie2 mapping index that includes all sequences in the ML model bundle.
+3. **Map all OTUs**. Map sample reads against all OTUs in the ML model bundle reference.
+4. **Predict**. Use Iimi (pre-release) to predict viral presence based on mappings.