Freesurfer

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Rosemary Le edited this page Jan 18, 2017 · 9 revisions

Freesurfer is an open source software suite for processing and analyzing human brain MRI images: https://surfer.nmr.mgh.harvard.edu/

The wiki documentation can be found here: https://surfer.nmr.mgh.harvard.edu/fswiki

For a structural MRI scan, Freesurfer can:

perform skull stripping
segment gray matter from white mater
label cortical and subcortical structures

This functionality is a gear on Flywheel.