Finalize missing docs and default params #44
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R_CMD_check | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up R ${{ matrix.r }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Set up pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install HDF5 library on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install libhdf5-dev libglpk-dev libgl1-mesa-dev libglu1-mesa-dev libmagick++-dev | |
| - name: Install XQuartz on macOS | |
| if: runner.os == 'macOS' | |
| run: brew install xquartz --cask | |
| - name: Install dependencies | |
| run: | | |
| install.packages(c("remotes", "rcmdcheck", "covr")) | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| if: runner.os != 'Linux' | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning") | |
| shell: Rscript {0} | |
| - name: Check on Linux | |
| if: runner.os == 'Linux' | |
| run: | | |
| export DISPLAY=:99 | |
| sudo Xvfb -ac :99 -screen 0 1280x1024x24 > /dev/null 2>&1 & | |
| Rscript -e 'rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning")' | |
| - name: Test coverage | |
| if: runner.os != 'Windows' | |
| run: | | |
| Rscript -e 'covr::codecov(token = "${{ secrets.CODECOV_TOKEN }}")' | |
| # # - name: Run codecov | |
| # run: | | |
| # covr::codecov(token = "") | |
| # shell: Rscript {0} | |
| # - name: Upload coverage reports to Codecov | |
| # uses: codecov/codecov-action@v3 | |
| # with: | |
| # token: ${{ secrets.CODECOV_TOKEN }} |