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jw156605 authored Jul 21, 2021
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Expand Up @@ -17,7 +17,7 @@ SquiggleNet is a 1D ResNet based model to classify Oxford Nanopore raw electrica


## Inference
Use a pretrained model (two are available in the models folder, or you could use your own pretrained model) to make inference on fast5 files.
Use a pretrained model (two are available in the models folder, or you could use your own pretrained model) to make inference on fast5 files. To incorporate SquiggleNet into a read-until pipeline, simply run the model on the fast5 files returned by the MinKNOW API, then check the classification results to issue eject commands for the reads classified as non-target.

Options:
```python
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