Install the python packages networkx and kmapper and the R packages liger (https://github.com/MacoskoLab/liger) and reticulate.
Then clone the repository, cd to the repository directory, and run source("run_topologizer.R") from an R session.
You can then build a topological representation of datasets analyzed with liger by calling the run_topologizer function directly on a liger object.
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Topologizer
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