module__org.bibliome.alvisnlp.modules.I2B2Reader
#org.bibliome.alvisnlp.modules.I2B2Reader
org.bibliome.alvisnlp.modules.I2B2Reader reads files in the format of the I2B2 challenge.
This module is experimental.
org.bibliome.alvisnlp.modules.I2B2Reader reads documents in I2B2 challenge including the text of documents, tokenization as annotations, concepts as annotations, assertions as annotation features and relations as tuples.
Optional
Type: InputDirectory
Path to the directory containing I2B2 text files.
Optional
Type: InputDirectory
Path to the directory where assertion files can be found.
Optional
Type: InputDirectory
Path to the directory that contains concept annotations.
Optional
Type: Mapping
Constant features to add to each annotation created by this module
Optional
Type: Mapping
Constant features to add to each document created by this module
Optional
Type: Mapping
Constant features to add to each relation created by this module
Optional
Type: Mapping
Constant features to add to each section created by this module
Optional
Type: Mapping
Constant features to add to each tuple created by this module
Optional
Type: InputDirectory
Path to the directory where relation files can be found.
Default value: assertion
Type: String
Default value: type
Type: String
Feature where to store the concept type.
Default value: concepts
Type: String
Name of the layer where to store concepts annotations.
Default value: left
Type: String
Name of the left argument of relations.
Default value: lineno
Type: String
Name of the feature where to store the line number.
Default value: lines
Type: String
Name of the layer where to store lines.
Default value: right
Type: String
Default value: text
Type: String
Name of the unique section of each document.
Default value: tokenno
Type: String
Feature where to store the token index.
Default value: tokens
Type: String
Name of the layer where to store tokens.