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Nagarajan Lab

Git repository for Niranjan Nagarajan's Group

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  1. lofreq lofreq Public

    LoFreq Star: Sensitive variant calling from sequencing data

    C 102 32

  2. OPERA-MS OPERA-MS Public

    OPERA-MS - Hybrid Metagenomic Assembler

    C++ 92 17

  3. CaDRReS CaDRReS Public

    Cancer Drug Response prediction using a Recommender System

    Python 41 15

  4. GERMS_16S_pipeline GERMS_16S_pipeline Public

    Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences

    Python 14 7

  5. CaDRReS-Sc CaDRReS-Sc Public

    CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data

    Jupyter Notebook 14 5

  6. INC-Seq INC-Seq Public

    INC-Seq: Accurate single molecule reads using nanopore sequencing

    Python 13 4

Repositories

Showing 10 of 43 repositories
  • XNA_Basecaller Public

    Code for paper: "Direct high-throughput deconvolution of unnatural bases via nanopore sequencing and bootstrapped learning"

    CSB5/XNA_Basecaller’s past year of commit activity
    Python 2 0 0 0 Updated Dec 13, 2024
  • CSB5/skin_metatranscriptome’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Dec 9, 2024
  • SG90 Public
    CSB5/SG90’s past year of commit activity
    HTML 1 0 0 0 Updated Aug 14, 2024
  • Recovery_Determinants_Study Public

    Data and scripts of Antibiotic Recovery Study

    CSB5/Recovery_Determinants_Study’s past year of commit activity
    R 5 MIT 4 0 0 Updated Jul 15, 2024
  • OPERA-MS Public

    OPERA-MS - Hybrid Metagenomic Assembler

    CSB5/OPERA-MS’s past year of commit activity
    C++ 92 17 38 0 Updated Jul 3, 2024
  • food_centre_microbiome Public

    City-wide metagenomic surveillance of food centres reveals location-specific microbial signatures and enrichment of antibiotic resistance genes

    CSB5/food_centre_microbiome’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 5, 2024
  • AD-caregiver-manuscript Public

    Files and scripts to generate figures for the manuscript titled "Shared signatures and divergence in skin microbiomes of children with atopic dermatitis and their adult caregivers"

    CSB5/AD-caregiver-manuscript’s past year of commit activity
    Assembly 0 0 0 0 Updated Sep 12, 2023
  • Candida_auris_CladeVI Public

    WGS analysis for Candida auris

    CSB5/Candida_auris_CladeVI’s past year of commit activity
    Jupyter Notebook 2 2 0 0 Updated Jul 31, 2023
  • CaDRReS Public

    Cancer Drug Response prediction using a Recommender System

    CSB5/CaDRReS’s past year of commit activity
    Python 41 GPL-3.0 15 3 2 Updated Jul 6, 2023
  • SPMP Public

    Singapore Platinum Metagenomes Project

    CSB5/SPMP’s past year of commit activity
    Jupyter Notebook 3 MIT 3 0 0 Updated Mar 13, 2023