VCF 4.4 Feature branch #261
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- tests INFO:CN can be float - tests multiple symbolic alleles/SVLEN/SVCLAIM - tests SVCLAIM DJ type - Test Copy number as genotypes failed_CNV_001.vcf - Test SVCLAIM Is not D, J or DJ failed_CNV_002.vcf - Number of SVCLAIM failed_CNV_003.vcf - SVCLAIM is missing for a DEL symbolic allele
GA4GHTT-232 - vcf4.4 initial changes
Add VCF 4.4 test files for SVCLAIM
Co-authored-by: April Shen <april.tuesday@gmail.com>
GA4GHTT-261 - changes for CN, SVLEN, SVCLAIM
GA4GHTT-261 - Add Test files for STR and new phasing notation
…8 for 4.4 (#251) * update for CNV:TR and optional leading phasing info * Squashed changes on Allow synonyms to be the same value if they are on the same line * update to generate mac arm binary * Update install_dependencies.sh for c-ares c-ares download link changed to GitHub * Squashed changes on Allow colon in chromosome names * Bump version to 0.9.7 * ported pr248 for vcf4.4 - Allow colon in chromosome names --------- Co-authored-by: tcezard <tcezard@ebi.ac.uk>
* type, cardinality and test update * minor updates * update based on comments
Co-authored-by: Timothee Cezard <tcezard@ebi.ac.uk>
GA4GHTT-276: 4.4 changes - optional meta, format CN, CICN, PSL, PSO, PSQ
* minor fixes and updates * test files for v4.4 changes
* with ragel -G2 * a few warning fixes * header regenerated with latest vcf.ragel, -G2
Remove debugulator from build and release
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