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Choice of number of hybridizations
Claudia Solis-Lemus edited this page Jun 5, 2016
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Model selection tools are necessary to estimate the number of hybridizations (h). We use the log pseudolikelihood profile with h. A sharp improvement is expected until h reaches the best value and a slower, linear improvement thereafter.
The log pseudolikelihood score is an attribute of the network object:
net.loglik.
(fixit: add plot here)
PhyloNetworks Workshop
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