Increase max SRA size to 100G

PavlidisLab · Sep 3, 2024 · 67570e9 · 67570e9
1 parent 03573a3
commit 67570e9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/rnaseq_pipeline/sources/sra.py b/rnaseq_pipeline/sources/sra.py
@@ -54,7 +54,7 @@ def _get_ncbi_public_dir():
     def run(self):
         yield sratoolkit.Prefetch(self.srr,
                                   self.output().path,
-                                  max_size=65,
+                                  max_size=100,
                                   scheduler_partition='Wormhole',
                                   metadata=self.metadata,
                                   walltime=timedelta(hours=2))