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Add --force-single-end and --force-paired-reads Python Package using Conda #142: Commit 0de706c pushed by arteymix
October 28, 2024 22:04 2m 20s master
master
October 28, 2024 22:04 2m 20s
Pass --rerun to GenerateReportForExperiment in SubmitExperimentReport… Python Package using Conda #141: Commit 8e71bc4 pushed by arteymix
September 3, 2024 22:30 3m 44s master
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September 3, 2024 22:30 3m 44s
Increase max SRA size to 100G Python Package using Conda #140: Commit 67570e9 pushed by arteymix
September 3, 2024 20:48 3m 29s master
master
September 3, 2024 20:48 3m 29s
Revert "Add a priority to GenerateReportForExperiment" Python Package using Conda #139: Commit eeae8be pushed by arteymix
August 30, 2024 22:51 2m 6s master
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August 30, 2024 22:51 2m 6s
Add a priority to GenerateReportForExperiment Python Package using Conda #138: Commit ebde490 pushed by arteymix
August 30, 2024 22:22 2m 16s master
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August 30, 2024 22:22 2m 16s
Add perl to the dependencies for RSEM Python Package using Conda #137: Commit 298d201 pushed by arteymix
August 26, 2024 18:32 2m 34s master
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August 26, 2024 18:32 2m 34s
Include webviewer templates in the package data Python Package using Conda #136: Commit dddefee pushed by arteymix
August 23, 2024 17:10 2m 21s master
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August 23, 2024 17:10 2m 21s
Add a Makefile Python Package using Conda #135: Commit ddafd0c pushed by arteymix
August 19, 2024 18:43 2m 21s master
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August 19, 2024 18:43 2m 21s
Use Python 3.9 on the CI Python Package using Conda #134: Commit 632542d pushed by arteymix
August 19, 2024 18:31 2m 20s master
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August 19, 2024 18:31 2m 20s
Add a check for validity of GEO metadata Python Package using Conda #133: Commit bbaf421 pushed by arteymix
August 19, 2024 17:37 2m 29s master
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August 19, 2024 17:37 2m 29s
Avoid overriding metadata in DownloadGeoSample and DownloadSraExperiment Python Package using Conda #132: Commit 16f249d pushed by arteymix
August 13, 2024 19:24 2m 28s master
master
August 13, 2024 19:24 2m 28s
Make SubmitExperimentReportToGemma rerunnable Python Package using Conda #131: Commit ae02f56 pushed by arteymix
August 13, 2024 17:43 2m 59s master
master
August 13, 2024 17:43 2m 59s
Drop the paired_read_expeirments option and simplify pairedness check Python Package using Conda #130: Commit fed06f5 pushed by arteymix
August 13, 2024 17:43 2m 42s master
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August 13, 2024 17:43 2m 42s
Add a 2 hours walltime limit for prefetch tasks Python Package using Conda #129: Commit 7ba68a1 pushed by arteymix
August 13, 2024 17:21 2m 41s master
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August 13, 2024 17:21 2m 41s
Improve logic for detecting bulk RNA-Seq datasets Python Package using Conda #128: Commit 1a660ed pushed by arteymix
July 3, 2024 17:49 1m 38s master
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July 3, 2024 17:49 1m 38s
Addresses missing spots_with_mates column in SRA runinfo (fix #93) Python Package using Conda #127: Commit b626a41 pushed by arteymix
June 25, 2024 19:23 1m 38s master
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June 25, 2024 19:23 1m 38s
Remove -f flag when calling fillBatchInfo Python Package using Conda #126: Commit 51d5874 pushed by arteymix
June 14, 2024 21:43 1m 35s master
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June 14, 2024 21:43 1m 35s
Bump min requirement for bioluigi to 0.3.4 Python Package using Conda #125: Commit a34826a pushed by arteymix
June 7, 2024 19:40 1m 31s master
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June 7, 2024 19:40 1m 31s
Perform sample renaming for the MultiQC report Python Package using Conda #124: Commit 56984af pushed by arteymix
June 7, 2024 19:38 1m 29s master
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June 7, 2024 19:38 1m 29s
Add a systemd unit for running the pipeline and use conda run Python Package using Conda #123: Commit fb399fa pushed by arteymix
May 23, 2024 23:32 1m 31s master
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May 23, 2024 23:32 1m 31s
Add ssRNA-seq to the list of supported strategies Python Package using Conda #122: Commit 4352fec pushed by arteymix
May 21, 2024 23:14 1m 31s master
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May 21, 2024 23:14 1m 31s
Fix rename of GemmaTask to GemmaTaskMixin and GemmaCliTask Python Package using Conda #121: Commit cdbe165 pushed by arteymix
May 21, 2024 20:40 1m 40s master
master
May 21, 2024 20:40 1m 40s
Relocate Gemma-specific configuration under [rnaseq_pipeline.gemma] Python Package using Conda #120: Commit ab6b567 pushed by arteymix
May 21, 2024 20:40 1m 31s master
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May 21, 2024 20:40 1m 31s
Make Gemma's appdata directory configurable Python Package using Conda #119: Commit ac1da2a pushed by arteymix
May 21, 2024 20:39 1m 33s master
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May 21, 2024 20:39 1m 33s
Remove unused STAR_CLEANUP_SCRIPT config Python Package using Conda #118: Commit acf0e84 pushed by arteymix
May 17, 2024 17:50 1m 43s master
master
May 17, 2024 17:50 1m 43s