Wire up VDI client

.gitignore

@@ -122,3 +122,5 @@ dist
 !.yarn/releases
 !.yarn/sdks
 !.yarn/versions
+
+.DS_Store

packages/libs/user-datasets-legacy/.env.sample

@@ -0,0 +1,11 @@
+VEUPATHDB_LOGIN_USER=apidb
+VEUPATHDB_LOGIN_PASS=**********
+
+BASE_URL=https://qa.microbiomedb.org
+WEBAPP=mbio
+
+REACT_APP_WDK_SERVICE_URL=$BASE_URL/$WEBAPP/service
+
+DATASET_IMPORT_SERVICE_URL=$BASE_URL/dataset-import
+
+REACT_APP_AVAILABLE_UPLOAD_TYPES=biom

packages/libs/user-datasets-legacy/.github/workflows/compile.yml

@@ -0,0 +1,17 @@
+name: Compile Check
+
+on:
+  pull_request:
+
+jobs:
+  compile:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-node@v2
+        with:
+          node-version: 14
+      - name: Check TypeScript compilation
+        run: |
+          yarn install
+          yarn tsc --noEmit

packages/libs/user-datasets-legacy/.github/workflows/npm-publish.yml

@@ -0,0 +1,22 @@
+name: Node.js Package
+
+on:
+  push:
+    branches: [ main ]
+
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-node@v2
+        with:
+          node-version: 14
+      - name: Build NPM packages
+        run: |
+            yarn install
+            yarn build-npm-modules
+      - uses: JS-DevTools/npm-publish@v1
+        with:
+          token: ${{ secrets.NPM_TOKEN }}
+          access: public

packages/libs/user-datasets-legacy/.gitignore

@@ -0,0 +1,25 @@
+# See https://help.github.com/articles/ignoring-files/ for more about ignoring files.
+
+# dependencies
+/node_modules
+/.pnp
+.pnp.js
+
+# testing
+/coverage
+
+# production
+/build
+/lib
+
+# misc
+.DS_Store
+.env
+.env.local
+.env.development.local
+.env.test.local
+.env.production.local
+
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*

packages/libs/user-datasets-legacy/.prettierignore

@@ -0,0 +1,24 @@
+# See https://help.github.com/articles/ignoring-files/ for more about ignoring files.
+
+# dependencies
+/node_modules
+/.pnp
+.pnp.js
+
+# testing
+/coverage
+
+# production
+/build
+/lib
+
+# misc
+.DS_Store
+.env.local
+.env.development.local
+.env.test.local
+.env.production.local
+
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*

packages/libs/user-datasets-legacy/LICENSE

@@ -0,0 +1,201 @@
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packages/libs/user-datasets-legacy/README.adoc

@@ -0,0 +1,56 @@
+# Getting Started with Create React App
+
+This project was bootstrapped with https://github.com/facebook/create-react-app[Create React App], using the https://github.com/VEuPathDB/web-dev/packages/cra-template[`@veupathdb` template].
+
+## Available Scripts
+
+In the project directory, you can run:
+
+### `yarn start`
+
+Runs the app in the development mode.
+Open http://localhost:3000[http://localhost:3000] to view it in the browser.
+
+The page will reload if you make edits.
+You will also see any lint errors in the console.
+
+You will be prompted to enter the VEuPathDB BRC Pre-Release Login credentials.
+
+**Environment Variables**
+
+- **`VEUPATHDB_LOGIN_USER`** VEuPathDB BRC prerelease user name (optional, but recommended)
+- **`VEUPATHDB_LOGIN_PASS`** VEuPathDB BRC prerelease user password (optional, but recommended)
+- **`REACT_APP_WDK_SERVICE_URL`** URL for a VEuPathDB service endpoint (required)
+- **`DATASET_IMPORT_SERVICE_URL`** URL for a dataset import service endpoint (required)
+- **`REACT_APP_AVAILABLE_UPLOAD_TYPES`** Comma-separated list of upload types which the local client will support (required)
+
+### `yarn test`
+
+Launches the test runner in the interactive watch mode.
+See the section about https://facebook.github.io/create-react-app/docs/running-tests[running tests] for more information.
+
+### `yarn build`
+
+Builds the app for production to the `build` folder.
+It correctly bundles React in production mode and optimizes the build for the best performance.
+
+The build is minified and the filenames include the hashes.
+Your app is ready to be deployed!
+
+See the section about https://facebook.github.io/create-react-app/docs/deployment[deployment] for more information.
+
+### `yarn eject`
+
+**Note: this is a one-way operation. Once you `eject`, you can’t go back!**
+
+If you aren’t satisfied with the build tool and configuration choices, you can `eject` at any time. This command will remove the single build dependency from your project.
+
+Instead, it will copy all the configuration files and the transitive dependencies (webpack, Babel, ESLint, etc) right into your project so you have full control over them. All of the commands except `eject` will still work, but they will point to the copied scripts so you can tweak them. At this point you’re on your own.
+
+You don’t have to ever use `eject`. The curated feature set is suitable for small and middle deployments, and you shouldn’t feel obligated to use this feature. However we understand that this tool wouldn’t be useful if you couldn’t customize it when you are ready for it.
+
+## Learn More
+
+You can learn more in the https://facebook.github.io/create-react-app/docs/getting-started[Create React App documentation].
+
+To learn React, check out the https://reactjs.org/[React documentation].