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Releases: a-h-b/binny

De Onlanden

09 Aug 08:22
@a-h-b a-h-b
v2.2.15
9cb1abe
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Changes:

  • improved runtimes
  • increased configurability: co-assembly mode for using shorter contigs if more samples' depth information is available, choice to mask potentially disruptive sequences, choice to remove contigs based on Nx, choice to extract single-contig bins first, set binning parameters
  • wrapper: ensure conda functionality, allow user download of database
  • bonus: the default settings should yield improved binning results compared to previous versions
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Stille Kern

29 May 14:03
@a-h-b a-h-b
v2.1.beta50-36
b403df6
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Stille Kern

Re-worked to allow more flexibility with the configuration (all major settings in config file). Only one wrapper. Auto-installation of all dependencies.

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Het Twiske

06 Feb 21:43
@a-h-b a-h-b
v2.0.3
ba4a8d3
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Het Twiske

just like v2.0.2, but both run scripts now support mantis setup.

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Winterkoning

02 Feb 20:08
@a-h-b a-h-b
v2.0.2
e075f53
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Winterkoning

What's Changed

  • Load compatible version of UniFunc (1.1) for Mantis 1.3 during install by @ohickl in #20
  • Correct HDBSCAN depth inclusion variables - Update binny_main.py by @ohickl in #21

Full Changelog: v2.0.0...v2.0.2

Contributors

ohickl
Assets 2
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De Trickel

22 Dec 12:59
@a-h-b a-h-b
v2.0.1
d4c0615
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De Trickel

What's Changed

  • Binny with completeness and purity estimate based bin naming and direct coverage input. by @ohickl in #1
  • Python Binny alpha by @ohickl in #3
  • Update config.default.yaml by @ohickl in #4
  • Update binny_functions.py by @ohickl in #5
  • Update config.init.yaml by @ohickl in #6
  • Update config.test.yaml by @ohickl in #7
  • Update binny_functions.py by @ohickl in #8
  • Python Binny alpha v006 by @ohickl in #9
  • Simplify Snakmake env installation? by @ohickl in #10
  • Change from test to mantis setup by @ohickl in #11
  • Fix another leftover test line by @ohickl in #12
  • Adapt installation to new Mantis config format by @ohickl in #13
  • Adapt installation to new Mantis config format v2 by @ohickl in #14
  • Binny_alpha_008: by @ohickl in #15
  • Binny beta v0.50 by @ohickl in #16
  • Fix config by @ohickl in #17
  • Add output path variable to some binny functions and more spelling fi… by @ohickl in #18

New Contributors

  • @ohickl made their first contribution in #1

Full Changelog: https://github.com/a-h-b/binny/commits/v2.0.1

Contributors

ohickl
Assets 2
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De Machine

22 Dec 11:08
@a-h-b a-h-b
v2.0.0
d4c0615
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De Machine

python binny, wrapped in Snakemake

Assets 2
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