Skip to content

Issues: andersen-lab/ivar

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

42 Open 86 Closed
42 Open 86 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

weird variant TSV output
#179 opened May 2, 2024 by Norina28
1
header format of .tsv did not match!
#178 opened Apr 25, 2024 by zdk427
3
Does ivar trim only from the ends of aligned BAM files?
#177 opened Apr 10, 2024 by yl315504
2
Parsing GFF_FEATURE
#174 opened Mar 13, 2024 by jfouret
Variants returns multiple AA with 1.00 frequency
#173 opened Jan 31, 2024 by shoulton-invivyd
2
REF_AA not consistent with actual AA at the position from reference protein fasta file
#172 opened Jan 16, 2024 by Shawn-X-Zhang
2
Header format error in ivar filtervariants
#171 opened Nov 29, 2023 by fshepherd13
@cmaceves
1
Segmentation fault (core dumped)
#170 opened Jul 25, 2023 by mksingh2104
5
Further speedup in iVar Trim primer finding enhancement New feature or request
#162 opened Apr 5, 2023 by niemasd v1.4.3
@cmaceves
3
Clarification of new ivar consensus -c (minimum insertion frequency) parameter
#149 opened Feb 13, 2023 by wm75
@cmaceves
Concurrency for ivar trim? enhancement New feature or request
#139 opened Oct 9, 2022 by philiptzou
@cmaceves
10
ivar consensus: call reference at positions with low coverage enhancement New feature or request
#131 opened Jun 23, 2022 by alephreish
1
Ivar variants issue with indels
#126 opened Apr 4, 2022 by Alema91
1
Allow different thresholds for insertions and SNVs enhancement New feature or request
#114 opened Jan 7, 2022 by bwlang
@gkarthik @cmaceves
2
How does ivar handle samtools mpileup output for overlapping Paired-End Reads?
#113 opened Dec 13, 2021 by ggrimes
1
How does ivar deal with conflicting/overlapping variants?
#104 opened Jun 23, 2021 by charlesfoster
Inconsistency between ivar consensus and ivar variants
#103 opened Jun 14, 2021 by IsabelFE
5
iVar variants inconsistency
#100 opened May 18, 2021 by gianfilippo
2
GFF file not recognized
#98 opened May 11, 2021 by domenico-simone
@cmaceves
6
ivar consensus: option -q is not filtering low quality bases
#97 opened Apr 23, 2021 by pmenzel
@gkarthik
1
ivar variants: reducing q-score threshold results in high P-value for deletion
#96 opened Apr 22, 2021 by pmenzel
1
iVar doesnt trim right end of single end reads
#94 opened Apr 1, 2021 by JenkoB
1
ivar calls three nucleotide changes instead of just one complete codon change enhancement New feature or request
#92 opened Mar 23, 2021 by saramonzon
@gkarthik
1
iVar miss-priming issues?
#91 opened Mar 22, 2021 by dcm9123
1
underclipping after an insertion
#90 opened Mar 4, 2021 by bwlang
@gkarthik
2
ProTip! Find all open issues with in progress development work with linked:pr.