Update BEDTools version to 2.31.0 (#627)

* Update BEDTools version. * Fix for changed naming in bedtools static binaries.
broadinstitute · Jan 24, 2024 · 9debd6d · 9debd6d
1 parent 56ff236
commit 9debd6d
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/dockerfiles/sv-base-mini/Dockerfile b/dockerfiles/sv-base-mini/Dockerfile
@@ -2,7 +2,7 @@
 # some basic bioinformatics utilities.
 ARG UBUNTU_RELEASE="22.04"
 ARG HTSLIB_VERSION="1.15.1"
-ARG BEDTOOLS_VERSION="2.30.0"
+ARG BEDTOOLS_VERSION="2.31.0"
 ARG VCFTOOLS_VERSION="0.1.16"
 
 ARG APT_REQUIRED_PACKAGES="/opt/apt-required-packages.list"
@@ -46,9 +46,9 @@ RUN wget -q https://github.com/vcftools/vcftools/releases/download/v$VCFTOOLS_VE
 # during install, bedtools needs python2 to be callable as "python"
 RUN ln -s /usr/bin/python2 /usr/bin/python
 ARG BEDTOOLS_VERSION
-RUN wget -q https://github.com/arq5x/bedtools2/releases/download/v$BEDTOOLS_VERSION/bedtools.static.binary && \
+RUN wget -q https://github.com/arq5x/bedtools2/releases/download/v$BEDTOOLS_VERSION/bedtools.static && \
  mkdir -p /opt/bedtools/bin && \
- mv bedtools.static.binary /opt/bedtools/bin/bedtools && \
+ mv bedtools.static /opt/bedtools/bin/bedtools && \
  chmod a+x /opt/bedtools/bin/bedtools