Pull requests: broadinstitute/gatk-sv

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Pull requests list

Add genotype filtering Terra workflow configs and documentation

#695 opened Jul 2, 2024 by mwalker174 Loading…

1

Reduce memory usage in GenotypeSRPart1

#693 opened Jun 27, 2024 by mwalker174 Loading…

Update GatherSampleEvidence & TrainGCNV docs documentation Improvements or additions to documentation

#681 opened May 29, 2024 by VJalili • Draft

Add documentation for the de-novo pipeline

#675 opened May 13, 2024 by VJalili • Draft

2 tasks

Refactor workflow inputs/output for consistency

#668 opened Apr 25, 2024 by VJalili • Draft

2 tasks done

Scripts to create downsampled files

#662 opened Apr 2, 2024 by VJalili Loading…

4 tasks done

Remove outliers across per-contig VCFs

#654 opened Mar 11, 2024 by epiercehoffman • Draft

Workflow to apply NCR and reference artifact filters and remove zero-carrier sites

#653 opened Mar 8, 2024 by epiercehoffman • Draft

1

fix: add sd_locs_vcf_index input to SDtoBAF

#644 opened Feb 12, 2024 by simojoe Loading…

1

2

Change default behavior of GatherSampleEvidence to skip running module metrics

#633 opened Jan 31, 2024 by VJalili • Draft

4

Removed pairwise batch effect checks from WDL workflow

#617 opened Nov 9, 2023 by shadizaheri Loading…

4

Add TransferVcfAnnotations workflow

#533 opened May 11, 2023 by mwalker174 • Draft

Extend functionality for outlier sample exclusion workflow

#496 opened Feb 11, 2023 by RCollins13 Loading…

4

Add reclustering WDLs (do not merge)

#446 opened Oct 12, 2022 by mwalker174 • Draft

Update batch effect workflows

#435 opened Oct 5, 2022 by mwalker174 Loading…

an alpha version of a report generator that creats a report of the re…

#416 opened Sep 23, 2022 by shadizaheri Loading…

1

KN Picard Metrics Aggregation Script

#364 opened Jun 29, 2022 by krithikanathamuni • Draft

21

Update GATK versions

#324 opened Mar 29, 2022 by mwalker174 • Draft