Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Disable MakeCohortVcfMetrics by default to avoid pesky resource errors #630

Merged
merged 1 commit into from
Apr 29, 2024

Conversation

epiercehoffman
Copy link
Collaborator

Multiple users have encountered out-of-memory errors in MakeCohortVcfMetrics with larger cohorts. It can be costly to rerun CleanVcf with updated resources for very large cohorts. This metrics collection is meant for development and is not necessary for users to run every time, so it can be safely disabled. An alternative would be to increase the default memory, but it is enough memory for the test set and unnecessary to run for large cohorts so this seems more efficient.

Copy link
Collaborator

@mwalker174 mwalker174 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good. We should do this in other modules as well, as we're discussing in #633.

@mwalker174 mwalker174 merged commit 8267f0f into main Apr 29, 2024
2 checks passed
@mwalker174 mwalker174 deleted the eph_disable_makecohortvcfmetrics branch April 29, 2024 16:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants