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Update GatherSampleEvidence & TrainGCNV docs #681

Merged
merged 26 commits into from
Sep 25, 2024
Merged

Update GatherSampleEvidence & TrainGCNV docs #681

merged 26 commits into from
Sep 25, 2024

Commits on May 13, 2024

  1. Extend docs.

    @VJalili
    VJalili committed May 13, 2024
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  2. Merge remote-tracking branch 'upstream/main' into docs_gather_sample_… 

    …evidence
    @VJalili
    VJalili committed May 13, 2024
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Commits on May 29, 2024

  1. Add Scramble to GSE.

    @VJalili
    VJalili committed May 29, 2024
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  2. Update TrainGCNV docs.

    @VJalili
    VJalili committed May 29, 2024
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  3. Merge remote-tracking branch 'upstream/main' into docs_gather_sample_… 

    …evidence
    @VJalili
    VJalili committed May 29, 2024
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Commits on Jun 6, 2024

  1. Document the annotated_intervals output.

    @VJalili
    VJalili committed Jun 6, 2024
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Commits on Jun 12, 2024

  1. Add an option to highlight text.

    @VJalili
    VJalili committed Jun 12, 2024
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Commits on Aug 2, 2024

  1. Extend docs on inputs and outputs of workflows.

    @VJalili
    VJalili committed Aug 2, 2024
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  2. Fix typo & add diagram for gather sample evidence.

    @VJalili
    VJalili committed Aug 2, 2024
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  3. Update header level to match inputs section.

    @VJalili
    VJalili committed Aug 2, 2024
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Commits on Sep 13, 2024

  1. Update website/docs/modules/gather_sample_evidence.md 

    Co-authored-by: Mark Walker <markw@broadinstitute.org>
    @VJalili @mwalker174
    VJalili and mwalker174 authored Sep 13, 2024
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  2. Update website/docs/modules/gather_sample_evidence.md 

    Co-authored-by: Mark Walker <markw@broadinstitute.org>
    @VJalili @mwalker174
    VJalili and mwalker174 authored Sep 13, 2024
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  3. Update website/docs/modules/train_gcnv.md 

    Co-authored-by: Mark Walker <markw@broadinstitute.org>
    @VJalili @mwalker174
    VJalili and mwalker174 authored Sep 13, 2024
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  4. Replace direct link with a reference to the resources file.

    @VJalili
    VJalili committed Sep 13, 2024
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  5. Update website/docs/modules/train_gcnv.md 

    Co-authored-by: Mark Walker <markw@broadinstitute.org>
    @VJalili @mwalker174
    VJalili and mwalker174 authored Sep 13, 2024
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  6. Replace direct links with references to the resources file.

    @VJalili
    VJalili committed Sep 13, 2024
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  7. Separate gatk-sv input, & add additional external docs link.

    @VJalili
    VJalili committed Sep 13, 2024
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  8. Remove links.

    @VJalili
    VJalili committed Sep 13, 2024
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  9. Add a single-line descript to avoid empty section. Needs to be extend… 

    …ed in follow-up PRs.
    @VJalili
    VJalili committed Sep 13, 2024
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Commits on Sep 18, 2024

  1. update diagrams to display recommended invocation order.

    @VJalili
    VJalili committed Sep 18, 2024
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  2. add a common inputs section & remove some values.

    @VJalili
    VJalili committed Sep 18, 2024
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  3. make plural

    @VJalili
    VJalili committed Sep 18, 2024
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Commits on Sep 19, 2024

  1. update.

    @VJalili
    VJalili committed Sep 19, 2024
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  2. update link

    @VJalili
    VJalili committed Sep 19, 2024
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  3. clarify homogeneous

    @VJalili
    VJalili committed Sep 19, 2024
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Commits on Sep 25, 2024

  1. Fix a broken link.

    @VJalili
    VJalili committed Sep 25, 2024
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