Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add Scramble metrics to the qc table generated in EvidenceQC #702

Draft
wants to merge 2 commits into
base: main
Choose a base branch
from

Conversation

kirtanav98
Copy link
Contributor

@kirtanav98 kirtanav98 commented Aug 1, 2024

This addresses git issue 700. The script that makes the qc table in EvidenceQC does not currently add any scramble metrics to the qc table. The wdl and the python script to make the table were changed to add Scramble metrics if Scramble is run. This was tested using womtool validation, and on a random subset of samples from the 1kgp workspace in Terra using melt inputs or scramble inputs.

…ble and update wdl inputs to script accordingly
@kirtanav98 kirtanav98 self-assigned this Aug 1, 2024
@kirtanav98 kirtanav98 marked this pull request as draft August 1, 2024 13:33
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant