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switch biosample_to_genbank task to use viral-core which is required …
viral-pipelines CI #2613: Commit 269656e pushed by dpark01
September 23, 2024 20:35 2m 0s dp-genbank
September 23, 2024 20:35 2m 0s
slurp bash code into python
viral-pipelines CI #2612: Commit 5af2632 pushed by dpark01
September 23, 2024 20:23 1m 43s dp-genbank
September 23, 2024 20:23 1m 43s
use simpler docker
viral-pipelines CI #2611: Commit 85a3e6a pushed by dpark01
September 23, 2024 20:19 1m 48s dp-genbank
September 23, 2024 20:19 1m 48s
fix docker versions
viral-pipelines CI #2610: Commit a67ec32 pushed by dpark01
September 23, 2024 15:16 24m 50s dp-genbank
September 23, 2024 15:16 24m 50s
Merge remote-tracking branch 'origin/master' into dp-genbank
viral-pipelines CI #2609: Commit 430cb02 pushed by dpark01
September 23, 2024 15:09 1m 30s dp-genbank
September 23, 2024 15:09 1m 30s
v2.3.6.0
viral-pipelines CI #2608: Release v2.3.6.0 created by dpark01
September 23, 2024 12:40 30m 50s
September 23, 2024 12:40 30m 50s
Merge pull request #556 from broadinstitute/dp-bump-core
viral-pipelines CI #2607: Commit cc8a4b7 pushed by dpark01
September 23, 2024 12:40 27m 36s v2.3.6.0
September 23, 2024 12:40 27m 36s
Merge pull request #556 from broadinstitute/dp-bump-core
viral-pipelines CI #2606: Commit cc8a4b7 pushed by dpark01
September 23, 2024 12:33 30m 11s master
September 23, 2024 12:33 30m 11s
Push on master
CodeQL #104: by dpark01
September 23, 2024 12:33 2m 16s
September 23, 2024 12:33 2m 16s
Scheduled
CodeQL #103: by github-advanced-security bot
September 20, 2024 12:02 2m 18s
September 20, 2024 12:02 2m 18s
PR #556
CodeQL #102: by dpark01
September 20, 2024 11:25 2m 19s
September 20, 2024 11:25 2m 19s
bump upstream docker images
viral-pipelines CI #2605: Pull request #556 synchronize by dpark01
September 20, 2024 11:25 31m 59s dp-bump-core
September 20, 2024 11:25 31m 59s
bump requirements-modules oops
viral-pipelines CI #2604: Commit a241e1f pushed by dpark01
September 20, 2024 11:25 22m 53s dp-bump-core
September 20, 2024 11:25 22m 53s
PR #556
CodeQL #101: by dpark01
September 20, 2024 11:08 2m 18s
September 20, 2024 11:08 2m 18s
bump upstream docker images
viral-pipelines CI #2603: Pull request #556 synchronize by dpark01
September 20, 2024 11:08 1m 22s dp-bump-core
September 20, 2024 11:08 1m 22s
bump viral-assemble
viral-pipelines CI #2602: Commit acfd1d4 pushed by dpark01
September 20, 2024 11:08 1m 29s dp-bump-core
September 20, 2024 11:08 1m 29s
Merge pull request #554 from broadinstitute/dp-scaffold
viral-pipelines CI #2601: Commit 4179ee0 pushed by dpark01
September 20, 2024 01:08 26m 11s master
September 20, 2024 01:08 26m 11s
Push on master
CodeQL #100: by dpark01
September 20, 2024 01:08 1m 45s
September 20, 2024 01:08 1m 45s
PR #556
CodeQL #99: by dpark01
September 19, 2024 22:40 1m 42s
September 19, 2024 22:40 1m 42s
bump upstream docker images
viral-pipelines CI #2600: Pull request #556 synchronize by dpark01
September 19, 2024 22:40 44m 33s dp-bump-core
September 19, 2024 22:40 44m 33s
santize fasta header before running metrics
viral-pipelines CI #2599: Commit 033966b pushed by dpark01
September 19, 2024 22:40 26m 38s dp-bump-core
September 19, 2024 22:40 26m 38s
PR #554
CodeQL #98: by dpark01
September 19, 2024 22:24 1m 53s
September 19, 2024 22:24 1m 53s
scaffold multitaxa: drop empty assembly output rows
viral-pipelines CI #2598: Pull request #554 synchronize by dpark01
September 19, 2024 22:24 25m 25s dp-scaffold
September 19, 2024 22:24 25m 25s
Terra/Cromwell doesnt like write_tsv outside of input context
viral-pipelines CI #2597: Commit 0915bf5 pushed by dpark01
September 19, 2024 22:24 25m 10s dp-scaffold
September 19, 2024 22:24 25m 10s
PR #554
CodeQL #97: by dpark01
September 19, 2024 22:03 1m 55s
September 19, 2024 22:03 1m 55s