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PR #562 CodeQL #115: by tomkinsc
October 21, 2024 21:38 1m 52s
October 21, 2024 21:38 1m 52s
add task: download_from_web() to download a URL to a file viral-pipelines CI #2652: Pull request #562 synchronize by tomkinsc
October 21, 2024 21:38 24m 42s ct-add-task-get-from-web
ct-add-task-get-from-web
October 21, 2024 21:38 24m 42s
add md5-based file integrity checkng to download_from_url, and option… viral-pipelines CI #2651: Commit 191fc91 pushed by tomkinsc
October 21, 2024 21:38 24m 55s ct-add-task-get-from-web
ct-add-task-get-from-web
October 21, 2024 21:38 24m 55s
Scheduled CodeQL #114: by github-advanced-security bot
October 18, 2024 12:02 1m 57s
October 18, 2024 12:02 1m 57s
PR #563 CodeQL #113: by tomkinsc
October 15, 2024 16:05 2m 16s
October 15, 2024 16:05 2m 16s
s/Array[File]+/Array[File?]+/g for tsv_files input in terra_tsv_to_table.wdl viral-pipelines CI #2650: Pull request #563 opened by tomkinsc
October 15, 2024 16:05 26m 21s ct-terra-troubleshoot-undefined-input-files
ct-terra-troubleshoot-undefined-input-files
October 15, 2024 16:05 26m 21s
s/Array[File]+/Array[File?]+/g for tsv_files input in terra_tsv_to_ta… viral-pipelines CI #2649: Commit 5ffee51 pushed by tomkinsc
October 15, 2024 16:04 25m 31s ct-terra-troubleshoot-undefined-input-files
ct-terra-troubleshoot-undefined-input-files
October 15, 2024 16:04 25m 31s
add task: download_from_web() to download a URL to a file viral-pipelines CI #2648: Pull request #562 opened by tomkinsc
October 14, 2024 21:19 25m 43s ct-add-task-get-from-web
ct-add-task-get-from-web
October 14, 2024 21:19 25m 43s
PR #562 CodeQL #112: by tomkinsc
October 14, 2024 21:19 2m 13s
October 14, 2024 21:19 2m 13s
download_from_web task: allow user to specify the output filename viral-pipelines CI #2647: Commit 3423051 pushed by tomkinsc
October 14, 2024 21:15 25m 53s ct-add-task-get-from-web
ct-add-task-get-from-web
October 14, 2024 21:15 25m 53s
add task: download_from_web() to download a URL to a file viral-pipelines CI #2646: Commit cfb37cc pushed by tomkinsc
October 14, 2024 21:07 25m 35s ct-add-task-get-from-web
ct-add-task-get-from-web
October 14, 2024 21:07 25m 35s
demux_deplete: allow multiple biosample attribute files viral-pipelines CI #2645: Pull request #561 opened by tomkinsc
October 14, 2024 21:06 24m 21s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 21:06 24m 21s
PR #561 CodeQL #111: by tomkinsc
October 14, 2024 21:06 2m 5s
October 14, 2024 21:06 2m 5s
pass array of biosample_map_tsvs to demux_deplete viral-pipelines CI #2644: Commit c5d743c pushed by tomkinsc
October 14, 2024 20:12 26m 0s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 20:12 26m 0s
update demux_deplete input name biosample_map -> biosample_map_tsvs i… viral-pipelines CI #2643: Commit b5f5aac pushed by tomkinsc
October 14, 2024 19:42 2m 38s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 19:42 2m 38s
omit unnecessary flattening of biosample attribute map file list viral-pipelines CI #2642: Commit 155add3 pushed by tomkinsc
October 14, 2024 19:29 2m 44s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 19:29 2m 44s
additional /find/replace/ viral-pipelines CI #2641: Commit 6567bd2 pushed by tomkinsc
October 14, 2024 19:11 1m 37s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 19:11 1m 37s
update biosample_map_tsvs variable name in one spot viral-pipelines CI #2640: Commit cddccd4 pushed by tomkinsc
October 14, 2024 17:46 1m 43s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 17:46 1m 43s
add utils import to demux_deplete workflow viral-pipelines CI #2639: Commit 525941d pushed by tomkinsc
October 14, 2024 16:33 1m 16s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 16:33 1m 16s
allow demux_deplete to accept multiple files containing biosample met… viral-pipelines CI #2638: Commit 9a83d93 pushed by tomkinsc
October 14, 2024 16:18 1m 18s ct-demux_deplete-allow_multiple_biosample_attribute_files
ct-demux_deplete-allow_multiple_biosample_attribute_files
October 14, 2024 16:18 1m 18s
Scheduled CodeQL #110: by github-advanced-security bot
October 11, 2024 12:02 2m 17s
October 11, 2024 12:02 2m 17s
PR #560 CodeQL #109: by tomkinsc
October 10, 2024 01:26 2m 17s
October 10, 2024 01:26 2m 17s
initial WIP commit of a task and workflow to run delphy viral-pipelines CI #2637: Pull request #560 opened by tomkinsc
October 10, 2024 01:26 41s ct-add-delphy-task-and-workflow
ct-add-delphy-task-and-workflow
October 10, 2024 01:26 41s
Scheduled CodeQL #108: by github-advanced-security bot
October 5, 2024 14:01 1m 54s
October 5, 2024 14:01 1m 54s
add contextual fasta input for augur_from_assemblies (#558) viral-pipelines CI #2636: Commit d1e8048 pushed by tomkinsc
October 4, 2024 15:42 46m 38s master
master
October 4, 2024 15:42 46m 38s