Releases: obophenotype/cell-ontology
v2024-08-16
Release Notes 2024-08-16
Ontology content summary
Metric | Value |
---|---|
Number of subclasses of root | 2769 |
Number of annotations on CL terms | 13003 |
Number of synonyms | 5791 |
Number of unique references | 1968 |
Number of unique references in definitions | 1383 |
Number of relationships with CL term as subject | 3725 |
Number of cellxgene classes | 686 |
Number of HRA classes | 494 |
Relationships removed: 38
Subject | Predicate | Object |
---|---|---|
type G enteroendocrine cell (CL:0000508) | subClassOf (rdfs:subClassOf) | mucous cell of stomach (CL:0002180) |
epithelial cell of uterus (CL:0002149) | subClassOf (rdfs:subClassOf) | endo-epithelial cell (CL:0002076) |
luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | exocrine cell (CL:0000152) |
duodenal goblet cell (CL:1000324) | subClassOf (rdfs:subClassOf) | duodenum glandular cell (CL:1001589) |
epithelial cell of endometrial gland (CL:0009084) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
folliculostellate cell (CL:0000642) | subClassOf (rdfs:subClassOf) | obsolete paracrine cell (CL:0000512) |
endometrial ciliated epithelial cell (CL:4030040) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
obsolete paracrine cell (CL:0000512) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) |
peritubular capillary endothelial cell (CL:1001033) | subClassOf (rdfs:subClassOf) | capillary endothelial cell (CL:0002144) |
trophoblast cell (CL:0000351) | BFO:0000050 | UBERON:0000358 |
small intestine goblet cell (CL:1000495) | subClassOf (rdfs:subClassOf) | small intestine glandular cell (CL:1001598) |
pancreatic goblet cell (CL:1000322) | subClassOf (rdfs:subClassOf) | pancreas exocrine glandular cell (CL:1001599) |
epithelial cell of cervix (CL:0002535) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney venous blood vessel cell (CL:1000893) |
surface mucosal cell of stomach (CL:0002182) | subClassOf (rdfs:subClassOf) | mucus secreting cell (CL:0000319) |
endovascular extravillous trophoblast cell (CL:4033063) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
kidney capillary endothelial cell (CL:1000892) | subClassOf (rdfs:subClassOf) | blood vessel endothelial cell (CL:0000071) |
goblet cell (CL:0000160) | subClassOf (rdfs:subClassOf) | glandular epithelial cell (CL:0000150) |
goblet cell (CL:0000160) | subClassOf (rdfs:subClassOf) | mucus secreting cell (CL:0000319) |
glandular cell of endometrium (CL:0002656) | BFO:0000050 | UBERON:0001295 |
squamous cell of ectocervix (CL:0002244) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
placental villus capillary endothelial cell (CL:2000062) | BFO:0000050 | UBERON:0010005 |
stem cell of gastric gland (CL:0002183) | subClassOf (rdfs:subClassOf) | exocrine cell (CL:0000152) |
colon goblet cell (CL:0009039) | subClassOf (rdfs:subClassOf) | colon glandular cell (CL:1001588) |
luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | obsolete paracrine cell (CL:0000512) |
columnar cell of endocervix (CL:0002152) | BFO:0000050 | UBERON:0000458 |
large intestine goblet cell (CL:1000320) | subClassOf (rdfs:subClassOf) | glandular cell of the large intestine (CL:0002658) |
stem cell of gastric gland (CL:0002183) | subClassOf (rdfs:subClassOf) | mucous cell of stomach (CL:0002180) |
lung goblet cell (CL:1000143) | subClassOf (rdfs:subClassOf) | lung secretory cell (CL:1000272) |
glomerular capillary endothelial cell (CL:1001005) | subClassOf (rdfs:subClassOf) | capillary endothelial cell (CL:0002144) |
vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney capillary endothelial cell (CL:1000892) |
epithelial cell of uterus (CL:0002149) | BFO:0000050 | UBERON:0000995 |
alveolar macrophage (CL:0000583) | RO:0001025 | UBERON:0002299 |
appendix goblet cell (CL:1000327) | subClassOf (rdfs:subClassOf) | appendix glandular cell (CL:1001585) |
mucous cell of stomach (CL:0002180) | BFO:0000050 | UBERON:0001199 |
squamous cell of ectocervix (CL:0002244) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
interstitial extravillous trophoblast cell (CL:4033062) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
columnar cell of endocervix (CL:0002152) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
Relationships added: 107
Subject | Predicate | Object |
---|---|---|
cycling type EC enteroendocrine cell (CL:4047004) | subClassOf (rdfs:subClassOf) | type EC enteroendocrine cell (CL:0000577) |
cycling dendritic cell (CL:4033070) | subClassOf (rdfs:subClassOf) | dendritic cell (CL:0000451) |
type G enteroendocrine cell (CL:0000508) | subClassOf (rdfs:subClassOf) | glandular epithelial cell of stomach (CL:0002659) |
cycling pulmonary alveolar type 2 cell (CL:4033080) | RO:0000056 | GO:0022402 |
duodenal goblet cell (CL:1000324) | BFO:0000050 | UBERON:0008346 |
cycling pulmonary alveolar type 2 cell (CL:4033080) | RO:0000086 | PATO:0002354 |
fallopian tube ciliated cell (CL:4030007) | BFO:0000050 | UBERON:0003889 |
trophoblast cell (CL:0000351) | RO:0002202 | trophectodermal cell (CL:1000274) |
spiny VIP neuron (CL:4042014) | BFO:0000050 | UBERON:0001950 |
cycling mononuclear phagocyte (CL:4033078) | RO:0000086 | PATO:0002354 |
goblet cell (CL:0000160) | BFO:0000051 | GO:0098594 |
VIP-ChAT interneuron (CL:4042015) | subClassOf (rdfs:subClassOf) | cholinergic neuron (CL:0000108) |
cycling T cell (CL:4033069) | RO:0000056 | GO:0022402 |
epithelial cell of uterus (CL:0002149) | BFO:0000050 | UBERON:0006955 |
cycling macrophage (CL:4033076) | subClassOf (rdfs:subClassOf) | cycling myeloid cell (CL:4033081) |
vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney medulla cell (CL:1000504) |
cycling dendritic cell (CL:4033070) | subClassOf (rdfs:subClassOf) | cycling mononuclear phagocyte (CL:4033078) |
vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | microvascular endothelial cell (CL:2000008) |
columnar cell of endocervix (CL:0002152) | subClassOf (rdfs:subClassOf) | epithelial cell of cervix (CL:0002535) |
cycling T cell (CL:4033069) | subClassOf (rdfs:subClassOf) | T cell (CL:0000084) |
cycling gamma-delta T cell (CL:4033072) | subClassOf (rdfs:subClassOf) | cycling T cell (CL:4033069) |
cycling plasma cell (CL:4047003) | subClassOf (rdfs:subClassOf) | plasma cell (CL:0000786) |
alveolar macrophage (CL:0000583) | RO:0001025 | UBERON:8850000 |
endometrial ciliated epithelial cell (CL:4030040) | subClassOf (rdfs:subClassOf) | multi-ciliated epithelial cell (CL:0005012) |
cycling monocyte (CL:4033073) | subClassOf (rdfs:subClassOf) | cycling mononuclear phagocyte (CL:4033078) |
cycling stromal cell (CL:4047001) | RO:0000086 | PATO:0002354 |
cycling monocyte (CL:4033073) | subClassOf (rdfs:subClassOf) | monocyte (CL:0000576) |
cycling alveolar macrophage (CL:4033077) | subClassOf (rdfs:subClassOf) | cycling macrophage (CL:4033076) |
cycling type EC enteroendocrine cell (CL:4047004) | RO:0000086 | PATO:0002354 |
epithelial cell of endometrial gland (CL:0009084) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
cycling neuroblast (sensu Vertebrata) (CL:4047005) | RO:0000086 | PATO:0002354 |
glandular cell of endometrium (CL:0002656) | BFO:0000050 | UBERON:0004811 |
columnar cell of endocervix (CL:0002152) | BFO:0000050 | UBERON:0012252 |
cycling glial cell (CL:4047002) | RO:0000086 | PATO:0002354 |
cycling endothelial cell of lymphatic vessel (CL:4033079) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
cycling plasma cell (CL:4047003) | RO:0000056 | GO:0022402 |
cycling macrophage (CL:4033076) | subClassOf (rdfs:subClassOf) | macrophage (CL:0000235) |
squamous cell of ectocervix (CL:0002244) | BFO:0000050 | UBERON:0012251 |
cycling mononuclear phagocyte (CL:4033078) | RO:0000056 | GO:0022402 |
trophoblast cell (CL:0000351) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
cycling stromal cell (CL:4047001) | subClassOf (rdfs:subClassOf) | stromal cell (CL:0000499) |
cycling type EC enteroendocrine cell (CL:404... |
v2024-07-10
Release Notes 2024-07-10
Ontology content summary
Metric | Value |
---|---|
Number of subclasses of root | 2747 |
Number of annotations on CL terms | 12904 |
Number of synonyms | 5740 |
Number of unique references | 1968 |
Number of unique references in definitions | 1355 |
Number of relationships with CL term as subject | 3743 |
Number of cellxgene classes | 686 |
Number of HRA classes | 494 |
Relationships removed: 77
Subject | Predicate | Object |
---|---|---|
sncg GABAergic cortical interneuron (CL:4023015) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
sncg GABAergic cortical interneuron (CL:4023015) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
kidney afferent arteriole cell (CL:1001006) | subClassOf (rdfs:subClassOf) | kidney corpuscule cell (CL:1000612) |
bronchioalveolar stem cell (CL:0002638) | subClassOf (rdfs:subClassOf) | basal cell of epithelium of terminal bronchiole (CL:1000350) |
bronchioalveolar stem cell (CL:0002638) | subClassOf (rdfs:subClassOf) | basal cell of epithelium of respiratory bronchiole (CL:1000351) |
endothelial cell of Peyer's patch (CL:1000411) | subClassOf (rdfs:subClassOf) | epithelial cell of small intestine (CL:0002254) |
respiratory epithelial cell (CL:0002368) | BFO:0000050 | UBERON:0000065 |
basal cell of epithelium of terminal bronchiole (CL:1000350) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
basal cell of epithelium of terminal bronchiole (CL:1000350) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
basal cell of epithelium of lobular bronchiole (CL:1000352) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
basal cell of epithelium of lobular bronchiole (CL:1000352) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
lymph node lymphatic vessel endothelial cell (CL:0009115) | BFO:0000050 | UBERON:0001473 |
lymph node lymphatic vessel endothelial cell (CL:0009115) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
endothelial cell of placenta (CL:0009092) | subClassOf (rdfs:subClassOf) | placental epithelial cell (CL:0002577) |
lymphatic endothelial cell of subcapsular sinus floor (CL:0009108) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
basal cell of epithelium of trachea (CL:1000348) | subClassOf (rdfs:subClassOf) | tracheal epithelial cell (CL:0000307) |
endothelial cell of venule of lymph node (CL:4033000) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
blood vessel endothelial cell (CL:0000071) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
vip GABAergic cortical interneuron (CL:4023016) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
vip GABAergic cortical interneuron (CL:4023016) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
mesothelial cell of visceral pleura (CL:1000493) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
lung neuroendocrine cell (CL:1000223) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
endothelial cell of central vein of liver (CL:4033061) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
colon endothelial cell (CL:1001572) | subClassOf (rdfs:subClassOf) | colon epithelial cell (CL:0011108) |
kidney arteriole smooth muscle cell (CL:1001066) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
epithelial cell of alveolus of lung (CL:0010003) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
alveolar capillary type 1 endothelial cell (CL:4028002) | subClassOf (rdfs:subClassOf) | epithelial cell of alveolus of lung (CL:0010003) |
deuterosomal cell (CL:4033044) | BFO:0000050 | UBERON:0004802 |
endothelial cell of efferent lymphatic vessel (CL:4033006) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
epithelial cell of tracheobronchial tree (CL:0002202) | BFO:0000050 | UBERON:0007196 |
epithelial cell of upper respiratory tract (CL:0002631) | BFO:0000050 | UBERON:0001557 |
endothelial cell (CL:0000115) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
endothelial cell of sinusoid (CL:0002262) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
respiratory goblet cell (CL:0002370) | BFO:0000050 | UBERON:0004802 |
lymphatic endothelial cell of trabecula (CL:0009109) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
ovarian microvascular endothelial cell (CL:2000065) | subClassOf (rdfs:subClassOf) | epithelial cell of urethra (CL:1000296) |
lymphatic endothelial cell of medulla ceiling (CL:0009110) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
caudal ganglionic eminence derived interneuron (CL:4023064) | subClassOf (rdfs:subClassOf) | interneuron (CL:0000099) |
obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL:4023070) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL:4023070) | subClassOf (rdfs:subClassOf) | caudal ganglionic eminence derived interneuron (CL:4023064) |
kidney proximal convoluted tubule epithelial cell (CL:1000838) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
endothelial cell of respiratory system lymphatic vessel (CL:0009086) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
lamp5 GABAergic cortical interneuron (CL:4023011) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
lamp5 GABAergic cortical interneuron (CL:4023011) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
fenestrated endothelial cell (CL:0000666) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
epithelial cell of proximal tubule segment 3 (CL:4030011) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
glomerular endothelial cell (CL:0002188) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
glomerular endothelial cell (CL:0002188) | subClassOf (rdfs:subClassOf) | glomerular cell (CL:1000746) |
kidney blood vessel cell (CL:1000854) | subClassOf (rdfs:subClassOf) | renal cortical epithelial cell (CL:0002584) |
epithelial cell of lower respiratory tract (CL:0002632) | BFO:0000050 | UBERON:0001558 |
brush border epithelial cell (CL:0000239) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
epithelial cell of proximal tubule segment 1 (CL:4030009) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
kidney efferent arteriole cell (CL:1001009) | subClassOf (rdfs:subClassOf) | kidney corpuscule cell (CL:1000612) |
basal cell of epithelium of respiratory bronchiole (CL:1000351) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
basal cell of epithelium of respiratory bronchiole (CL:1000351) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
endothelial cell of high endothelial venule (CL:0002652) | subClassOf (rdfs:subClassOf) | columnar/cuboidal epithelial cell (CL:0000075) |
respiratory suprabasal cell (CL:4033048) | BFO:0000050 | UBERON:0004802 |
pulmonary alveolar type 2 cell (CL:0002063) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
lung endothelial cell (CL:1001567) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
corneal endothelial cell (CL:0000132) | subClassOf (rdfs:subClassOf) | neurecto-epithelial cell (CL:0000710) |
dermis microvascular lymphatic vessel endothelial cell (CL:2000041) | BFO:0000050 | UBERON:0008339 |
kidney venous system smooth muscle cell (CL:1001068) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
endothelial cell of hepatic portal vein (CL:0009094) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
kidney artery smooth muscle cell (CL:1001064) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
epithelial cell of proximal tubule segment 2 (CL:4030010) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
epithelial cell of proximal tubule (CL:0002306) | subClassOf (rdfs:subClassOf) | brush border epithelial cell (CL:0000239) |
squamous endothelial cell (CL:0002653) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (... |
v2024-05-15
Ontology content summary
Metric | Value |
---|---|
Number of subclasses of root | 2743 |
Number of annotations on CL terms | 12857 |
Number of synonyms | 5718 |
Number of unique references | 1965 |
Number of unique references in definitions | 1335 |
Number of relationships with CL term as subject | 7449 |
Number of cellxgene classes | 686 |
Number of HRA classes | 493 |
What's Changed
- Adding editor's ID range by @JABelfiore in #2332
- Fixes #2324 synonym terminal Schwann cell by @JABelfiore in #2334
- NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes by @AvolaAmg in #2331
- Add new CL editor ID range by @Caroline-99 in #2336
- Fixes #2335 typo brush cell of trachebronchial tree by @Caroline-99 in #2340
- Add Jorstad paper as a reference to cortical neuron CL terms by @AvolaAmg in #2338
- Fixes #2315 revise myoepithelial cell mesodermal origin by @aleixpuigb in #2341
- Fixes #1562 merge foreskin melanocyte and melanocyte of foreskin by @Caroline-99 in #2353
- Re-classify 'R7 photoreceptor cell' as part of an ommatidium. by @gouttegd in #2347
- Add proper mappings management by @gouttegd in #2361
- Fixes #2288 NTR preplasmablast by @aleixpuigb in #2356
- Building the ZFA mapping set must depend on 'all_robot_plugins'. by @gouttegd in #2363
- Automatically generate text definitions from logical definitions by @gouttegd in #2349
- Update relations_guide.md by @dosumis in #2364
- Update ODK version used in workflows. by @gouttegd in #2368
- Change text definition intratelencepalic-projecting glutamatergic neurons in CL by @AvolaAmg in #2351
- Refreshing imports in preparation of CL release by @aleixpuigb in #2371
- CL release v2024-05-15 by @aleixpuigb in #2372
New Contributors
- @JABelfiore made their first contribution in #2332
- @Caroline-99 made their first contribution in #2336
Full Changelog: v2024-04-05...v2024-05-15
v2024-04-05
What's Changed
- Fixes #2282 typo text def neural crest fibroblast by @AvolaAmg in #2286
- Add ID range for new editor by @aleixpuigb in #2287
- 2283_Cell_types_with_missing_definition by @AvolaAmg in #2289
- Fixes #2290 2290_Kidney_blood_vessel_cell_revise_logical_definition by @AvolaAmg in #2291
- Reduce words on "merge-term" issue template by @anitacaron in #2302
- Update files for ODK 1.5 by @matentzn in #2299
- Making camera eye photoreceptor cell part of retina. by @cmungall in #2248
- NTR dermal chromatophore by @paulacalipho in #2308
- Use a dedicated token for the Ontobot workflow. by @gouttegd in #2314
- New Term Request TAC3-Positive interneurons by @AvolaAmg in #2303
- New Term Request TAC3-positive medium spiny neurons by @AvolaAmg in #2304
- Fixes #2318 edit myoepithelial cell of mammary gland by @aleixpuigb in #2323
- NTR-border-associated-macrophage by @AvolaAmg in #2319
- Refresh imports in preparation of CL release 2024-04-05 by @aleixpuigb in #2325
- CL release v2024-04-05 by @aleixpuigb in #2326
New Contributors
Full Changelog: v2024-02-13...v2024-04-05
v2024-02-13
v2024-02-13
Detailed differences for this release can be viewed in the diff file.
What's Changed
- Addresses #2259 NTR placental terms by @aleixpuigb in #2262
- CellXGene referred cells tagged by @hkir-dev in #2267
- Fix broken link to main release file by @anitacaron in #2263
- Fixes #2251 obsolete increased nucleus size by @aleixpuigb in #2268
- Fixes #2272 URL are not IRI for obsoleted terms by @aleixpuigb in #2273
- added lateral ganglionic eminence derived neuron by @shawntanzk in #2275
- Refresh imports in preparation of CL release v2024-02-13 by @aleixpuigb in #2278
- Fix obsolete object property bug by @aleixpuigb in #2279
- CL release v2024-02-13 by @aleixpuigb in #2280
New Contributors
Full Changelog: v2024-01-04...v2024-02-13
v2024-01-04
v2024-01-04
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/b517b5d8195fc4af2faed5f2a9e5436d4946c4d7/src/ontology/diffs/cl-diff.md
What's Changed
- Fixes #2244 keratocyte text definition by @aleixpuigb in #2249
- Addresses #2242 NTR endothelial cell of central vein of liver by @aleixpuigb in #2243
- Refresh imports 2024-01-04 by @aleixpuigb in #2257
- CL release 2024-01-04 by @aleixpuigb in #2258
Full Changelog: v2023-12-05...v2024-01-04
v2023-12-05
v2023-12-05
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/286560fd1a9f672bc44ae1846fc2f136c986bee9/src/ontology/diffs/cl-diff.md
What's Changed
- Addresses #1149 obsolete 'barrier epithelial cell' and 'seminal flui… in #2206
- Add slim coverage check running on local (branch) copy CL by @ubyndr in #2182
- Fixes #2212 class hierarchy 'peritubular capillary endothelial cell' by @aleixpuigb in #2213
- Fixes #2209 relabel fat cell by @aleixpuigb in #2210
- Adding
ontobot-change-agent
to create PRs based on appropriate Issues. by @hrshdhgd in #2211 - Update README.md by @dosumis in #2215
- Fixes #1266 populate mononuclear phagocyte by @aleixpuigb in #2208
- Addresses #2219 Revise logical definition for 'kidney collecting duct… in #2220
- Uncommented crucial line in
ontobot.yml
by @hrshdhgd in #2226 - Addresses #2203 [NTR-cxg] 'L5/6 near-projecting glutamatergic neuron' in #2222
- Update README.md by @dosumis in #2218
- Addresses #2224 Edit 'epithelial cell of lacrimal duct' in #2229
- Addresses #2030 Make kidney subset in #2230
- Check for the phrase
Hey ontobot
before running the workflow by @hrshdhgd in #2228 - File clean up fix for generic_coverage.py by @ubyndr in #2223
- Update inadvertently added contributor annotations in #2232
- Addresses #2202 NTR 'L6 IT Car3 glutamatergic neuron' in #2234
- Fix duplicated cross-references. by @gouttegd in #2236
- add new term 'mesenchymal stem cell of apical papilla by @paulacalipho in #2214
- Refresh imports in preparation for CL release by @aleixpuigb in #2237
- CL release 2023-12-05 by @aleixpuigb in #2238
New Contributors
Full Changelog: v2023-10-19...v2023-12-05
v2023-10-19
v2023-10-19
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/64876e247f17994f617c734b0eeb976a1a1afcb2/src/ontology/diffs/cl-diff.md
Note that http://purl.obolibrary.org/obo/cl#abbreviation abbreviation has been replaced by http://purl.obolibrary.org/obo/OMO_0003000 abbreviation.
What's Changed
- Standardised annotation property: abbreviation by @bvarner-ebi in #2159
- Deleted reports folder from root by @bvarner-ebi in #2161
- Edited subclasses of 'kidney cell' by @bvarner-ebi in #2163
- Added new term 'TCR-positive macrophage' by @bvarner-ebi in #2162
- Fixed unsat for syncytiotrophoblast cell by @aleixpuigb in #2165
- Added new term onychocyte by @aleixpuigb in #2168
- Edited Hofbauer cell by @aleixpuigb in #2170
- Added RO:0002100 ‘has soma location’ to get_scope_query method by @ubyndr in #2174
- Added new terms for region-agnostic L2/3-6 intratelencephalic projecting glutamatergic cortical neurons (by layer) by @bvarner-ebi in #2181
- Updated reference term for general upper level slim by @aleixpuigb in #2186
- Edited PURL for abbreviation in editing_guidelines.md by @bvarner-ebi in #2188
- Added new term 'ureteric bud cell' by @bvarner-ebi in #2185
- Changed
foaf:depicted_by
tofoaf:depiction
by @anitacaron in #2184 - Added new terms for lactocyte subtypes by @aleixpuigb in #2189
- Edited 'chandelier cell' by @bvarner-ebi in #2190
- Added new terms for mammary luminal epithelial cells by @aleixpuigb in #2187
- Refreshed imports 10-2023 by @bvarner-ebi in #2192
- Edited and relabelled 'mammary alveolar cell' to lactocyte by @aleixpuigb in #2196
- Removed CARO import by @anitacaron in #2199
- Edited lactocyte textual definition by @aleixpuigb in #2201
- Removed
oort
step from the release pipeline by @anitacaron in #2204 - CL release 2023-10-19 by @bvarner-ebi in #2205
Full Changelog: v2023-09-21...v2023-10-19
v2023-09-21
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/559d87b58bcb355a4364f8dc9f17a9a296581657/src/ontology/diffs/cl-diff.md
Note that three classes have been obsoleted:
'animal cell'
'native cell'
'somatic cell'
What's Changed
- Classified amacrine cells GABA vs glycine and dendrite field by @aleixpuigb in #2096
- Edited 'polyploid cell' by @bvarner-ebi in #2129
- Edited editing_guidelines.md regarding cross-references by @bvarner-ebi in #2130
- Updated synonym type on "subcapsular thymic epithelial cell" by @bvarner-ebi in #2131
- Removed synonyms that were the same as labels by @aleixpuigb in #2132
- Added label synonym polysemy check by @anitacaron in #2112
- Removed import folder in the root level by @anitacaron in #2135
- Added OMO as import by @anitacaron in #2134
- Refreshed imports 09-2023 by @bvarner-ebi in #2142
- Made plural synonym annotations consistent by @bvarner-ebi in #2143
- Added new term 'airway submucosal gland duct ciliated cell' by @aleixpuigb in #2145
- Edited text definition of 'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex' by @bvarner-ebi in #2149
- Added synonym to 'luteal cell' by @aleixpuigb in #2146
- Obsoleted 'native cell' and 'animal cell' by @bvarner-ebi in #2147
- Obsoleted 'somatic cell' by @bvarner-ebi in #2151
- Shortened labels for BDS terms by @shawntanzk in #1806
- Added new term 'mesenchymal stem cell of orbital adipose tissue' by @paulacalipho in #2153
- Refreshed imports 09-2023 by @bvarner-ebi in #2156
- CL release 2023-09-21 by @bvarner-ebi in #2157
Full Changelog: v2023-08-24...v2023-09-21
v2023-08-24
What's Changed
- Released diff poster by @shawntanzk in #1732
- Edited editor guidelines regarding CL labels with anatomical references by @bvarner-ebi in #2078
- Changed telocyte and lymphoblast subclass to seperate subclass by @shawntanzk in #2087
- Replaced invalid DOI IRIs in xrefs with doi: CURIE strings by @balhoff in #2089
- Edited 'olfactory granule cell' by @bvarner-ebi in #2085
- Edited abbreviation related synonyms by @aleixpuigb in #2091
- Added new terms for retinal ganglion cells by @aleixpuigb in #2090
- Obsoleted 'acid secreting cell' and Edited 'parietal cell' by @bvarner-ebi in #2098
- Merged 'choroid plexus cell' into 'choroid plexus epithelial cell' by @bvarner-ebi in #2088
- Edited 'pain receptor cell' by @bvarner-ebi in #2104
- Added 'depicted by' statements to SwissBioPics by @lubianat in #2092
- Removed IAO from imports by @anitacaron in #2093
- Made additional edits to 'pain receptor cell' by @bvarner-ebi in #2105
- Edited editor guidelines regarding annotation property 'see also' by @bvarner-ebi in #2109
- Added "cell" to synonyms of 'syncytiotrophoblast cell' by @shawntanzk in #2108
- Removed horizontal cell parent term from amacrine cells by @aleixpuigb in #2107
- Edited editor guidelines regarding MeSH cross-references by @bvarner-ebi in #2115
- Edited editor guidelines regarding URL cross-references by @bvarner-ebi in #2116
- Edited MeSH Tree Number cross-references by @bvarner-ebi in #2114
- Added new term 'perivascular cell' by @aleixpuigb in #2120
- Edited 'lung neuroendocrine cell' by @bvarner-ebi in #2118
- Refreshed imports 08-2023 by @bvarner-ebi in #2123
- CL release 2023-08-24 by @bvarner-ebi in #2125
Full Changelog: v2023-07-20...v2023-08-24