Releases: obophenotype/cell-ontology
Releases · obophenotype/cell-ontology
v2024-08-16
Release Notes 2024-08-16
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2769 |
| Number of annotations on CL terms | 13003 |
| Number of synonyms | 5791 |
| Number of unique references | 1968 |
| Number of unique references in definitions | 1383 |
| Number of relationships with CL term as subject | 3725 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 494 |
Relationships removed: 38
| Subject | Predicate | Object |
|---|---|---|
| type G enteroendocrine cell (CL:0000508) | subClassOf (rdfs:subClassOf) | mucous cell of stomach (CL:0002180) |
| epithelial cell of uterus (CL:0002149) | subClassOf (rdfs:subClassOf) | endo-epithelial cell (CL:0002076) |
| luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | exocrine cell (CL:0000152) |
| duodenal goblet cell (CL:1000324) | subClassOf (rdfs:subClassOf) | duodenum glandular cell (CL:1001589) |
| epithelial cell of endometrial gland (CL:0009084) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
| folliculostellate cell (CL:0000642) | subClassOf (rdfs:subClassOf) | obsolete paracrine cell (CL:0000512) |
| endometrial ciliated epithelial cell (CL:4030040) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
| obsolete paracrine cell (CL:0000512) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) |
| peritubular capillary endothelial cell (CL:1001033) | subClassOf (rdfs:subClassOf) | capillary endothelial cell (CL:0002144) |
| trophoblast cell (CL:0000351) | BFO:0000050 | UBERON:0000358 |
| small intestine goblet cell (CL:1000495) | subClassOf (rdfs:subClassOf) | small intestine glandular cell (CL:1001598) |
| pancreatic goblet cell (CL:1000322) | subClassOf (rdfs:subClassOf) | pancreas exocrine glandular cell (CL:1001599) |
| epithelial cell of cervix (CL:0002535) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney venous blood vessel cell (CL:1000893) |
| surface mucosal cell of stomach (CL:0002182) | subClassOf (rdfs:subClassOf) | mucus secreting cell (CL:0000319) |
| endovascular extravillous trophoblast cell (CL:4033063) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| kidney capillary endothelial cell (CL:1000892) | subClassOf (rdfs:subClassOf) | blood vessel endothelial cell (CL:0000071) |
| goblet cell (CL:0000160) | subClassOf (rdfs:subClassOf) | glandular epithelial cell (CL:0000150) |
| goblet cell (CL:0000160) | subClassOf (rdfs:subClassOf) | mucus secreting cell (CL:0000319) |
| glandular cell of endometrium (CL:0002656) | BFO:0000050 | UBERON:0001295 |
| squamous cell of ectocervix (CL:0002244) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
| placental villus capillary endothelial cell (CL:2000062) | BFO:0000050 | UBERON:0010005 |
| stem cell of gastric gland (CL:0002183) | subClassOf (rdfs:subClassOf) | exocrine cell (CL:0000152) |
| colon goblet cell (CL:0009039) | subClassOf (rdfs:subClassOf) | colon glandular cell (CL:1001588) |
| luminal hormone-sensing cell of mammary gland (CL:4033058) | subClassOf (rdfs:subClassOf) | obsolete paracrine cell (CL:0000512) |
| columnar cell of endocervix (CL:0002152) | BFO:0000050 | UBERON:0000458 |
| large intestine goblet cell (CL:1000320) | subClassOf (rdfs:subClassOf) | glandular cell of the large intestine (CL:0002658) |
| stem cell of gastric gland (CL:0002183) | subClassOf (rdfs:subClassOf) | mucous cell of stomach (CL:0002180) |
| lung goblet cell (CL:1000143) | subClassOf (rdfs:subClassOf) | lung secretory cell (CL:1000272) |
| glomerular capillary endothelial cell (CL:1001005) | subClassOf (rdfs:subClassOf) | capillary endothelial cell (CL:0002144) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney capillary endothelial cell (CL:1000892) |
| epithelial cell of uterus (CL:0002149) | BFO:0000050 | UBERON:0000995 |
| alveolar macrophage (CL:0000583) | RO:0001025 | UBERON:0002299 |
| appendix goblet cell (CL:1000327) | subClassOf (rdfs:subClassOf) | appendix glandular cell (CL:1001585) |
| mucous cell of stomach (CL:0002180) | BFO:0000050 | UBERON:0001199 |
| squamous cell of ectocervix (CL:0002244) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
| interstitial extravillous trophoblast cell (CL:4033062) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| columnar cell of endocervix (CL:0002152) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
Relationships added: 107
| Subject | Predicate | Object |
|---|---|---|
| cycling type EC enteroendocrine cell (CL:4047004) | subClassOf (rdfs:subClassOf) | type EC enteroendocrine cell (CL:0000577) |
| cycling dendritic cell (CL:4033070) | subClassOf (rdfs:subClassOf) | dendritic cell (CL:0000451) |
| type G enteroendocrine cell (CL:0000508) | subClassOf (rdfs:subClassOf) | glandular epithelial cell of stomach (CL:0002659) |
| cycling pulmonary alveolar type 2 cell (CL:4033080) | RO:0000056 | GO:0022402 |
| duodenal goblet cell (CL:1000324) | BFO:0000050 | UBERON:0008346 |
| cycling pulmonary alveolar type 2 cell (CL:4033080) | RO:0000086 | PATO:0002354 |
| fallopian tube ciliated cell (CL:4030007) | BFO:0000050 | UBERON:0003889 |
| trophoblast cell (CL:0000351) | RO:0002202 | trophectodermal cell (CL:1000274) |
| spiny VIP neuron (CL:4042014) | BFO:0000050 | UBERON:0001950 |
| cycling mononuclear phagocyte (CL:4033078) | RO:0000086 | PATO:0002354 |
| goblet cell (CL:0000160) | BFO:0000051 | GO:0098594 |
| VIP-ChAT interneuron (CL:4042015) | subClassOf (rdfs:subClassOf) | cholinergic neuron (CL:0000108) |
| cycling T cell (CL:4033069) | RO:0000056 | GO:0022402 |
| epithelial cell of uterus (CL:0002149) | BFO:0000050 | UBERON:0006955 |
| cycling macrophage (CL:4033076) | subClassOf (rdfs:subClassOf) | cycling myeloid cell (CL:4033081) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | kidney medulla cell (CL:1000504) |
| cycling dendritic cell (CL:4033070) | subClassOf (rdfs:subClassOf) | cycling mononuclear phagocyte (CL:4033078) |
| vasa recta cell (CL:1001036) | subClassOf (rdfs:subClassOf) | microvascular endothelial cell (CL:2000008) |
| columnar cell of endocervix (CL:0002152) | subClassOf (rdfs:subClassOf) | epithelial cell of cervix (CL:0002535) |
| cycling T cell (CL:4033069) | subClassOf (rdfs:subClassOf) | T cell (CL:0000084) |
| cycling gamma-delta T cell (CL:4033072) | subClassOf (rdfs:subClassOf) | cycling T cell (CL:4033069) |
| cycling plasma cell (CL:4047003) | subClassOf (rdfs:subClassOf) | plasma cell (CL:0000786) |
| alveolar macrophage (CL:0000583) | RO:0001025 | UBERON:8850000 |
| endometrial ciliated epithelial cell (CL:4030040) | subClassOf (rdfs:subClassOf) | multi-ciliated epithelial cell (CL:0005012) |
| cycling monocyte (CL:4033073) | subClassOf (rdfs:subClassOf) | cycling mononuclear phagocyte (CL:4033078) |
| cycling stromal cell (CL:4047001) | RO:0000086 | PATO:0002354 |
| cycling monocyte (CL:4033073) | subClassOf (rdfs:subClassOf) | monocyte (CL:0000576) |
| cycling alveolar macrophage (CL:4033077) | subClassOf (rdfs:subClassOf) | cycling macrophage (CL:4033076) |
| cycling type EC enteroendocrine cell (CL:4047004) | RO:0000086 | PATO:0002354 |
| epithelial cell of endometrial gland (CL:0009084) | subClassOf (rdfs:subClassOf) | epithelial cell of uterus (CL:0002149) |
| cycling neuroblast (sensu Vertebrata) (CL:4047005) | RO:0000086 | PATO:0002354 |
| glandular cell of endometrium (CL:0002656) | BFO:0000050 | UBERON:0004811 |
| columnar cell of endocervix (CL:0002152) | BFO:0000050 | UBERON:0012252 |
| cycling glial cell (CL:4047002) | RO:0000086 | PATO:0002354 |
| cycling endothelial cell of lymphatic vessel (CL:4033079) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| cycling plasma cell (CL:4047003) | RO:0000056 | GO:0022402 |
| cycling macrophage (CL:4033076) | subClassOf (rdfs:subClassOf) | macrophage (CL:0000235) |
| squamous cell of ectocervix (CL:0002244) | BFO:0000050 | UBERON:0012251 |
| cycling mononuclear phagocyte (CL:4033078) | RO:0000056 | GO:0022402 |
| trophoblast cell (CL:0000351) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| cycling stromal cell (CL:4047001) | subClassOf (rdfs:subClassOf) | stromal cell (CL:0000499) |
| cycling type EC enteroendocrine cell (CL:404... |
Contributors
dosumis, anitacaron, and 5 other contributors
Assets 44
- 1.38 MB
2024-08-16T15:16:48Z - 586 KB
2024-08-16T15:16:51Z - 2.11 MB
2024-08-16T15:16:52Z - 59.1 KB
2024-08-16T15:16:56Z - 1.9 MB
2024-08-16T15:16:56Z - 826 KB
2024-08-16T15:16:56Z - 2.86 MB
2024-08-16T15:16:58Z - 87.7 KB
2024-08-16T15:16:59Z - 4.5 MB
2024-08-16T15:14:48Z - 1.74 MB
2024-08-16T15:14:48Z -
2024-08-16T17:45:16Z -
2024-08-16T17:45:16Z - Loading
v2024-07-10
Release Notes 2024-07-10
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2747 |
| Number of annotations on CL terms | 12904 |
| Number of synonyms | 5740 |
| Number of unique references | 1968 |
| Number of unique references in definitions | 1355 |
| Number of relationships with CL term as subject | 3743 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 494 |
Relationships removed: 77
| Subject | Predicate | Object |
|---|---|---|
| sncg GABAergic cortical interneuron (CL:4023015) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| sncg GABAergic cortical interneuron (CL:4023015) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| kidney afferent arteriole cell (CL:1001006) | subClassOf (rdfs:subClassOf) | kidney corpuscule cell (CL:1000612) |
| bronchioalveolar stem cell (CL:0002638) | subClassOf (rdfs:subClassOf) | basal cell of epithelium of terminal bronchiole (CL:1000350) |
| bronchioalveolar stem cell (CL:0002638) | subClassOf (rdfs:subClassOf) | basal cell of epithelium of respiratory bronchiole (CL:1000351) |
| endothelial cell of Peyer's patch (CL:1000411) | subClassOf (rdfs:subClassOf) | epithelial cell of small intestine (CL:0002254) |
| respiratory epithelial cell (CL:0002368) | BFO:0000050 | UBERON:0000065 |
| basal cell of epithelium of terminal bronchiole (CL:1000350) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| basal cell of epithelium of terminal bronchiole (CL:1000350) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
| basal cell of epithelium of lobular bronchiole (CL:1000352) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| basal cell of epithelium of lobular bronchiole (CL:1000352) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
| lymph node lymphatic vessel endothelial cell (CL:0009115) | BFO:0000050 | UBERON:0001473 |
| lymph node lymphatic vessel endothelial cell (CL:0009115) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| endothelial cell of placenta (CL:0009092) | subClassOf (rdfs:subClassOf) | placental epithelial cell (CL:0002577) |
| lymphatic endothelial cell of subcapsular sinus floor (CL:0009108) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| basal cell of epithelium of trachea (CL:1000348) | subClassOf (rdfs:subClassOf) | tracheal epithelial cell (CL:0000307) |
| endothelial cell of venule of lymph node (CL:4033000) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| blood vessel endothelial cell (CL:0000071) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (CL:0000076) |
| vip GABAergic cortical interneuron (CL:4023016) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| vip GABAergic cortical interneuron (CL:4023016) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| mesothelial cell of visceral pleura (CL:1000493) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| lung neuroendocrine cell (CL:1000223) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| endothelial cell of central vein of liver (CL:4033061) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| colon endothelial cell (CL:1001572) | subClassOf (rdfs:subClassOf) | colon epithelial cell (CL:0011108) |
| kidney arteriole smooth muscle cell (CL:1001066) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| epithelial cell of alveolus of lung (CL:0010003) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| alveolar capillary type 1 endothelial cell (CL:4028002) | subClassOf (rdfs:subClassOf) | epithelial cell of alveolus of lung (CL:0010003) |
| deuterosomal cell (CL:4033044) | BFO:0000050 | UBERON:0004802 |
| endothelial cell of efferent lymphatic vessel (CL:4033006) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| epithelial cell of tracheobronchial tree (CL:0002202) | BFO:0000050 | UBERON:0007196 |
| epithelial cell of upper respiratory tract (CL:0002631) | BFO:0000050 | UBERON:0001557 |
| endothelial cell (CL:0000115) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| endothelial cell of sinusoid (CL:0002262) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| respiratory goblet cell (CL:0002370) | BFO:0000050 | UBERON:0004802 |
| lymphatic endothelial cell of trabecula (CL:0009109) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| ovarian microvascular endothelial cell (CL:2000065) | subClassOf (rdfs:subClassOf) | epithelial cell of urethra (CL:1000296) |
| lymphatic endothelial cell of medulla ceiling (CL:0009110) | subClassOf (rdfs:subClassOf) | endothelial cell of lymphatic vessel (CL:0002138) |
| caudal ganglionic eminence derived interneuron (CL:4023064) | subClassOf (rdfs:subClassOf) | interneuron (CL:0000099) |
| obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL:4023070) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| obsolete caudal ganglionic eminence derived GABAergic cortical interneuron (CL:4023070) | subClassOf (rdfs:subClassOf) | caudal ganglionic eminence derived interneuron (CL:4023064) |
| kidney proximal convoluted tubule epithelial cell (CL:1000838) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| endothelial cell of respiratory system lymphatic vessel (CL:0009086) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| lamp5 GABAergic cortical interneuron (CL:4023011) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| lamp5 GABAergic cortical interneuron (CL:4023011) | subClassOf (rdfs:subClassOf) | cerebral cortex GABAergic interneuron (CL:0010011) |
| fenestrated endothelial cell (CL:0000666) | subClassOf (rdfs:subClassOf) | epithelial cell (CL:0000066) |
| epithelial cell of proximal tubule segment 3 (CL:4030011) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| glomerular endothelial cell (CL:0002188) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| glomerular endothelial cell (CL:0002188) | subClassOf (rdfs:subClassOf) | glomerular cell (CL:1000746) |
| kidney blood vessel cell (CL:1000854) | subClassOf (rdfs:subClassOf) | renal cortical epithelial cell (CL:0002584) |
| epithelial cell of lower respiratory tract (CL:0002632) | BFO:0000050 | UBERON:0001558 |
| brush border epithelial cell (CL:0000239) | subClassOf (rdfs:subClassOf) | ciliated epithelial cell (CL:0000067) |
| epithelial cell of proximal tubule segment 1 (CL:4030009) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| kidney efferent arteriole cell (CL:1001009) | subClassOf (rdfs:subClassOf) | kidney corpuscule cell (CL:1000612) |
| basal cell of epithelium of respiratory bronchiole (CL:1000351) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| basal cell of epithelium of respiratory bronchiole (CL:1000351) | subClassOf (rdfs:subClassOf) | epithelial cell of tracheobronchial tree (CL:0002202) |
| endothelial cell of high endothelial venule (CL:0002652) | subClassOf (rdfs:subClassOf) | columnar/cuboidal epithelial cell (CL:0000075) |
| respiratory suprabasal cell (CL:4033048) | BFO:0000050 | UBERON:0004802 |
| pulmonary alveolar type 2 cell (CL:0002063) | subClassOf (rdfs:subClassOf) | BFO:0000002 |
| lung endothelial cell (CL:1001567) | subClassOf (rdfs:subClassOf) | epithelial cell of lung (CL:0000082) |
| corneal endothelial cell (CL:0000132) | subClassOf (rdfs:subClassOf) | neurecto-epithelial cell (CL:0000710) |
| dermis microvascular lymphatic vessel endothelial cell (CL:2000041) | BFO:0000050 | UBERON:0008339 |
| kidney venous system smooth muscle cell (CL:1001068) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| endothelial cell of hepatic portal vein (CL:0009094) | subClassOf (rdfs:subClassOf) | endothelial cell (CL:0000115) |
| kidney artery smooth muscle cell (CL:1001064) | subClassOf (rdfs:subClassOf) | meso-epithelial cell (CL:0002078) |
| epithelial cell of proximal tubule segment 2 (CL:4030010) | subClassOf (rdfs:subClassOf) | epithelial cell of proximal tubule (CL:0002306) |
| epithelial cell of proximal tubule (CL:0002306) | subClassOf (rdfs:subClassOf) | brush border epithelial cell (CL:0000239) |
| squamous endothelial cell (CL:0002653) | subClassOf (rdfs:subClassOf) | squamous epithelial cell (... |
Contributors
cmungall, dosumis, and 6 other contributors
Assets 44
v2024-05-15
Ontology content summary
| Metric | Value |
|---|---|
| Number of subclasses of root | 2743 |
| Number of annotations on CL terms | 12857 |
| Number of synonyms | 5718 |
| Number of unique references | 1965 |
| Number of unique references in definitions | 1335 |
| Number of relationships with CL term as subject | 7449 |
| Number of cellxgene classes | 686 |
| Number of HRA classes | 493 |
What's Changed
- Adding editor's ID range by @JABelfiore in #2332
- Fixes #2324 synonym terminal Schwann cell by @JABelfiore in #2334
- NTR protoplasmic astrocytes fibrous astrocytes interlaminar astrocytes by @AvolaAmg in #2331
- Add new CL editor ID range by @Caroline-99 in #2336
- Fixes #2335 typo brush cell of trachebronchial tree by @Caroline-99 in #2340
- Add Jorstad paper as a reference to cortical neuron CL terms by @AvolaAmg in #2338
- Fixes #2315 revise myoepithelial cell mesodermal origin by @aleixpuigb in #2341
- Fixes #1562 merge foreskin melanocyte and melanocyte of foreskin by @Caroline-99 in #2353
- Re-classify 'R7 photoreceptor cell' as part of an ommatidium. by @gouttegd in #2347
- Add proper mappings management by @gouttegd in #2361
- Fixes #2288 NTR preplasmablast by @aleixpuigb in #2356
- Building the ZFA mapping set must depend on 'all_robot_plugins'. by @gouttegd in #2363
- Automatically generate text definitions from logical definitions by @gouttegd in #2349
- Update relations_guide.md by @dosumis in #2364
- Update ODK version used in workflows. by @gouttegd in #2368
- Change text definition intratelencepalic-projecting glutamatergic neurons in CL by @AvolaAmg in #2351
- Refreshing imports in preparation of CL release by @aleixpuigb in #2371
- CL release v2024-05-15 by @aleixpuigb in #2372
New Contributors
- @JABelfiore made their first contribution in #2332
- @Caroline-99 made their first contribution in #2336
Full Changelog: v2024-04-05...v2024-05-15
Contributors
dosumis, gouttegd, and 4 other contributors
Assets 44
v2024-04-05
What's Changed
- Fixes #2282 typo text def neural crest fibroblast by @AvolaAmg in #2286
- Add ID range for new editor by @aleixpuigb in #2287
- 2283_Cell_types_with_missing_definition by @AvolaAmg in #2289
- Fixes #2290 2290_Kidney_blood_vessel_cell_revise_logical_definition by @AvolaAmg in #2291
- Reduce words on "merge-term" issue template by @anitacaron in #2302
- Update files for ODK 1.5 by @matentzn in #2299
- Making camera eye photoreceptor cell part of retina. by @cmungall in #2248
- NTR dermal chromatophore by @paulacalipho in #2308
- Use a dedicated token for the Ontobot workflow. by @gouttegd in #2314
- New Term Request TAC3-Positive interneurons by @AvolaAmg in #2303
- New Term Request TAC3-positive medium spiny neurons by @AvolaAmg in #2304
- Fixes #2318 edit myoepithelial cell of mammary gland by @aleixpuigb in #2323
- NTR-border-associated-macrophage by @AvolaAmg in #2319
- Refresh imports in preparation of CL release 2024-04-05 by @aleixpuigb in #2325
- CL release v2024-04-05 by @aleixpuigb in #2326
New Contributors
Full Changelog: v2024-02-13...v2024-04-05
Contributors
cmungall, anitacaron, and 5 other contributors
Assets 43
v2024-02-13
v2024-02-13
Detailed differences for this release can be viewed in the diff file.
What's Changed
- Addresses #2259 NTR placental terms by @aleixpuigb in #2262
- CellXGene referred cells tagged by @hkir-dev in #2267
- Fix broken link to main release file by @anitacaron in #2263
- Fixes #2251 obsolete increased nucleus size by @aleixpuigb in #2268
- Fixes #2272 URL are not IRI for obsoleted terms by @aleixpuigb in #2273
- added lateral ganglionic eminence derived neuron by @shawntanzk in #2275
- Refresh imports in preparation of CL release v2024-02-13 by @aleixpuigb in #2278
- Fix obsolete object property bug by @aleixpuigb in #2279
- CL release v2024-02-13 by @aleixpuigb in #2280
New Contributors
Full Changelog: v2024-01-04...v2024-02-13
Contributors
anitacaron, hkir-dev, and 2 other contributors
Assets 43
v2024-01-04
v2024-01-04
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/b517b5d8195fc4af2faed5f2a9e5436d4946c4d7/src/ontology/diffs/cl-diff.md
What's Changed
- Fixes #2244 keratocyte text definition by @aleixpuigb in #2249
- Addresses #2242 NTR endothelial cell of central vein of liver by @aleixpuigb in #2243
- Refresh imports 2024-01-04 by @aleixpuigb in #2257
- CL release 2024-01-04 by @aleixpuigb in #2258
Full Changelog: v2023-12-05...v2024-01-04
Contributors
aleixpuigb
Assets 43
v2023-12-05
v2023-12-05
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/286560fd1a9f672bc44ae1846fc2f136c986bee9/src/ontology/diffs/cl-diff.md
What's Changed
- Addresses #1149 obsolete 'barrier epithelial cell' and 'seminal flui… in #2206
- Add slim coverage check running on local (branch) copy CL by @ubyndr in #2182
- Fixes #2212 class hierarchy 'peritubular capillary endothelial cell' by @aleixpuigb in #2213
- Fixes #2209 relabel fat cell by @aleixpuigb in #2210
- Adding
ontobot-change-agentto create PRs based on appropriate Issues. by @hrshdhgd in #2211 - Update README.md by @dosumis in #2215
- Fixes #1266 populate mononuclear phagocyte by @aleixpuigb in #2208
- Addresses #2219 Revise logical definition for 'kidney collecting duct… in #2220
- Uncommented crucial line in
ontobot.ymlby @hrshdhgd in #2226 - Addresses #2203 [NTR-cxg] 'L5/6 near-projecting glutamatergic neuron' in #2222
- Update README.md by @dosumis in #2218
- Addresses #2224 Edit 'epithelial cell of lacrimal duct' in #2229
- Addresses #2030 Make kidney subset in #2230
- Check for the phrase
Hey ontobotbefore running the workflow by @hrshdhgd in #2228 - File clean up fix for generic_coverage.py by @ubyndr in #2223
- Update inadvertently added contributor annotations in #2232
- Addresses #2202 NTR 'L6 IT Car3 glutamatergic neuron' in #2234
- Fix duplicated cross-references. by @gouttegd in #2236
- add new term 'mesenchymal stem cell of apical papilla by @paulacalipho in #2214
- Refresh imports in preparation for CL release by @aleixpuigb in #2237
- CL release 2023-12-05 by @aleixpuigb in #2238
New Contributors
Full Changelog: v2023-10-19...v2023-12-05
Contributors
dosumis, paulacalipho, and 4 other contributors
Assets 43
v2023-10-19
v2023-10-19
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/64876e247f17994f617c734b0eeb976a1a1afcb2/src/ontology/diffs/cl-diff.md
Note that http://purl.obolibrary.org/obo/cl#abbreviation abbreviation has been replaced by http://purl.obolibrary.org/obo/OMO_0003000 abbreviation.
What's Changed
- Standardised annotation property: abbreviation by @bvarner-ebi in #2159
- Deleted reports folder from root by @bvarner-ebi in #2161
- Edited subclasses of 'kidney cell' by @bvarner-ebi in #2163
- Added new term 'TCR-positive macrophage' by @bvarner-ebi in #2162
- Fixed unsat for syncytiotrophoblast cell by @aleixpuigb in #2165
- Added new term onychocyte by @aleixpuigb in #2168
- Edited Hofbauer cell by @aleixpuigb in #2170
- Added RO:0002100 ‘has soma location’ to get_scope_query method by @ubyndr in #2174
- Added new terms for region-agnostic L2/3-6 intratelencephalic projecting glutamatergic cortical neurons (by layer) by @bvarner-ebi in #2181
- Updated reference term for general upper level slim by @aleixpuigb in #2186
- Edited PURL for abbreviation in editing_guidelines.md by @bvarner-ebi in #2188
- Added new term 'ureteric bud cell' by @bvarner-ebi in #2185
- Changed
foaf:depicted_bytofoaf:depictionby @anitacaron in #2184 - Added new terms for lactocyte subtypes by @aleixpuigb in #2189
- Edited 'chandelier cell' by @bvarner-ebi in #2190
- Added new terms for mammary luminal epithelial cells by @aleixpuigb in #2187
- Refreshed imports 10-2023 by @bvarner-ebi in #2192
- Edited and relabelled 'mammary alveolar cell' to lactocyte by @aleixpuigb in #2196
- Removed CARO import by @anitacaron in #2199
- Edited lactocyte textual definition by @aleixpuigb in #2201
- Removed
oortstep from the release pipeline by @anitacaron in #2204 - CL release 2023-10-19 by @bvarner-ebi in #2205
Full Changelog: v2023-09-21...v2023-10-19
Contributors
anitacaron, ubyndr, and aleixpuigb
Assets 39
v2023-09-21
Detailed differences for this release can be viewed at https://github.com/obophenotype/cell-ontology/blob/559d87b58bcb355a4364f8dc9f17a9a296581657/src/ontology/diffs/cl-diff.md
Note that three classes have been obsoleted:
'animal cell'
'native cell'
'somatic cell'
What's Changed
- Classified amacrine cells GABA vs glycine and dendrite field by @aleixpuigb in #2096
- Edited 'polyploid cell' by @bvarner-ebi in #2129
- Edited editing_guidelines.md regarding cross-references by @bvarner-ebi in #2130
- Updated synonym type on "subcapsular thymic epithelial cell" by @bvarner-ebi in #2131
- Removed synonyms that were the same as labels by @aleixpuigb in #2132
- Added label synonym polysemy check by @anitacaron in #2112
- Removed import folder in the root level by @anitacaron in #2135
- Added OMO as import by @anitacaron in #2134
- Refreshed imports 09-2023 by @bvarner-ebi in #2142
- Made plural synonym annotations consistent by @bvarner-ebi in #2143
- Added new term 'airway submucosal gland duct ciliated cell' by @aleixpuigb in #2145
- Edited text definition of 'L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex' by @bvarner-ebi in #2149
- Added synonym to 'luteal cell' by @aleixpuigb in #2146
- Obsoleted 'native cell' and 'animal cell' by @bvarner-ebi in #2147
- Obsoleted 'somatic cell' by @bvarner-ebi in #2151
- Shortened labels for BDS terms by @shawntanzk in #1806
- Added new term 'mesenchymal stem cell of orbital adipose tissue' by @paulacalipho in #2153
- Refreshed imports 09-2023 by @bvarner-ebi in #2156
- CL release 2023-09-21 by @bvarner-ebi in #2157
Full Changelog: v2023-08-24...v2023-09-21
Contributors
anitacaron, paulacalipho, and 2 other contributors
Assets 39
v2023-08-24
What's Changed
- Released diff poster by @shawntanzk in #1732
- Edited editor guidelines regarding CL labels with anatomical references by @bvarner-ebi in #2078
- Changed telocyte and lymphoblast subclass to seperate subclass by @shawntanzk in #2087
- Replaced invalid DOI IRIs in xrefs with doi: CURIE strings by @balhoff in #2089
- Edited 'olfactory granule cell' by @bvarner-ebi in #2085
- Edited abbreviation related synonyms by @aleixpuigb in #2091
- Added new terms for retinal ganglion cells by @aleixpuigb in #2090
- Obsoleted 'acid secreting cell' and Edited 'parietal cell' by @bvarner-ebi in #2098
- Merged 'choroid plexus cell' into 'choroid plexus epithelial cell' by @bvarner-ebi in #2088
- Edited 'pain receptor cell' by @bvarner-ebi in #2104
- Added 'depicted by' statements to SwissBioPics by @lubianat in #2092
- Removed IAO from imports by @anitacaron in #2093
- Made additional edits to 'pain receptor cell' by @bvarner-ebi in #2105
- Edited editor guidelines regarding annotation property 'see also' by @bvarner-ebi in #2109
- Added "cell" to synonyms of 'syncytiotrophoblast cell' by @shawntanzk in #2108
- Removed horizontal cell parent term from amacrine cells by @aleixpuigb in #2107
- Edited editor guidelines regarding MeSH cross-references by @bvarner-ebi in #2115
- Edited editor guidelines regarding URL cross-references by @bvarner-ebi in #2116
- Edited MeSH Tree Number cross-references by @bvarner-ebi in #2114
- Added new term 'perivascular cell' by @aleixpuigb in #2120
- Edited 'lung neuroendocrine cell' by @bvarner-ebi in #2118
- Refreshed imports 08-2023 by @bvarner-ebi in #2123
- CL release 2023-08-24 by @bvarner-ebi in #2125
Full Changelog: v2023-07-20...v2023-08-24
Contributors
balhoff, anitacaron, and 3 other contributors