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    92 repositories

    • fibsem

      Public
      A universal API for FIBSEM control
      Jupyter Notebook
      •
      MIT License
      •12•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • autolamella

      Public
      autolamella is a python package for automated cryo-lamella preparation with focused ion beam milling.
      Python
      •
      MIT License
      •14•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • FAIRly-depositing-data

      Public
      Data and Jupyter notebooks associated with the publication "Depositing biological segmentation datasets FAIRly"
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

    • antigen-app

      Public
      Web app for managing nanobody data
      JavaScript
      •
      Apache License 2.0
      •0•3•3•1•Updated Dec 17, 2024Dec 17, 2024

    • adventure-time

      Public
      Text-based adventure style escape rooms
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • christmastree2022

      Public
      To collate the work that we have done of the Christmas tree designs 2022's Christmas tree decorating competition
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • FlowCron-Globus_Flow-side

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • python-multem

      Public
      Python wrapper for the MULTEM simulation package
      C++
      •
      GNU General Public License v3.0
      •0•7•1•0•Updated Nov 28, 2024Nov 28, 2024

    • volume-segmantics

      Public
      A toolkit for semantic segmentation of volumetric data using PyTorch deep learning models
      Python
      •
      Apache License 2.0
      •6•1•0•1•Updated Nov 24, 2024Nov 24, 2024

    • parakeet

      Public
      Phantom generator
      Python
      •
      GNU General Public License v3.0
      •6•18•15•0•Updated Nov 22, 2024Nov 22, 2024

    • napari-quoll

      Public
      Napari plugin for resolution measurement of EM images
      Python
      •
      Apache License 2.0
      •0•2•2•0•Updated Nov 19, 2024Nov 19, 2024

    • scicat-backend-next

      Public
      SciCat Data Catalogue Backend
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •24•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • GENNUS

      Public
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • empiar-spw

      Public
      TypeScript
      •
      Apache License 2.0
      •1•1•24•0•Updated Oct 11, 2024Oct 11, 2024

    • blast

      Public
      Containerised build of NCBI BLAST+ tools
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • GeoLlama

      Public
      A Python package for estimating sample thickness in cryo electron tomograms
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • scicatlive

      Public
      Simple getting started procedure for SciCat
      JavaScript
      •10•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • PillarTomo

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • whippet

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • MULTEM

      Public
      C++
      •
      GNU General Public License v3.0
      •26•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • guanaco

      Public
      Python
      •
      GNU General Public License v3.0
      •2•1•4•0•Updated Aug 28, 2024Aug 28, 2024

    • fib-sem-charge-mitigation

      Public
      Data acquisition scripts for FIBSEM
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

    • scicatproject.github.io

      Public
      SciCat Data Catalogue Documentation Website
      SCSS
      •5•0•0•0•Updated Jul 26, 2024Jul 26, 2024

    • kompressor

      Public
      A lossless neural compression framework built on top of JAX.
      Python
      •
      MIT License
      •0•3•9•0•Updated Jul 15, 2024Jul 15, 2024

    • LeopardGecko

      Public
      Software to analyse microscopy volumetric data that has been segmented by ML prediction
      Jupyter Notebook
      •
      Apache License 2.0
      •2•3•0•0•Updated Jul 13, 2024Jul 13, 2024

    • VirusFactory

      Public
      Python notebooks for the paper Segmentation of Volumetric Bio-Imaging Data Using Crowdsourced Object-Based Annotation
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 9, 2024Jul 9, 2024

    • CreeperChallenge

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • python-template

      Public template
      A template repository for python projects
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 14, 2024May 14, 2024

    • RedLionfish

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •4•29•2•1•Updated Mar 22, 2024Mar 22, 2024

    • redlionfish-feedstock

      Public
      A conda-smithy repository for redlionfish.
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated Mar 22, 2024Mar 22, 2024