Robust, flexible and resource-efficient pipelines using Go and the commandline

A language and runtime for distributed, incremental data processing in the cloud

Compute over Data framework for public, transparent, and optionally verifiable computation

Rapid large-scale prokaryote pan genome analysis

Package for fetching metadata and downloading data from SRA/ENA/GEO

Analysis Pipeline for Single Cell ATAC-seq

Finds SNP sites from a multi-FASTA alignment file

Whole Genome Sequencing analysis, WGS analysis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

GCP for Bioinformatics Researchers

A tool to circularize genome assemblies

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Antimicrobial Resistance Identification By Assembly

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

ATAC-seq and DNase-seq processing pipeline

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

NGLess: NGS with less work

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.