a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
a broadly applicable tool for automated gene identification and retrieval
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
PyPop: Python for Population Genomics
a versatile toolkit for processing and analyzing diverse types of sequence data
Reproducible Quantitative Methods for EEB
Create, modify and analyse phylogenetic trees in R
Evolutionary simulation where agents age, reproduce, and eat each other
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.
Newick formatted (phylogenetic) trees
HARE: Genetic Feature Enrichment Analysis Pipeline
Source code for ManyEcoEvo Manuscript
Two-Tier Ensemble Aggregation Gene Co-expression Network (TEA-GCN): Capturing tissue/condition-specific co-expression from large transcriptomic datasets
R package: BALCONY (Better ALignment CONsensus analYsis)
Software for analysing Many-Analysts' style data and generating the ManyEcoEvo project data
My GitHub Page
Numerical model for life history evolution of age-structured populations
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