HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
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Sep 21, 2023 - Python
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horizontal-gene-transfer
Here are 13 public repositories matching this topic...
Horizontal gene transfer (HGT) identification pipeline
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May 17, 2023 - Python
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
systems-biology phylogenetics horizontal-gene-transfer sequence-analysis evolutionary-biology high-throughput-pipeline
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Feb 11, 2023 - Python
Rapid and simple taxonomic profiling of genome and metagenome contigs
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Jun 13, 2023 - Python
Automatic evaluation of HGTs
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Dec 21, 2024 - Python
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
r-package horizontal-gene-transfer association-analysis bacterial-genomes antimicrobial-resistance mobile-genetic-elements
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Aug 8, 2022 - R
A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
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Nov 13, 2018 - Python
codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
horizontal-gene-transfer phage gene-clusters codon-usage biosynthetic-gene-clusters mobile-genetic-elements
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Jul 31, 2024 - Python
A simulator for horizontal gene transfer (HGT) in microbial communities
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Oct 5, 2020 - Python
Cemracs 2018 project (CIRM, July-August 2018)
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Jun 14, 2019 - Python
TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.
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Dec 20, 2024 - R
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Mar 24, 2023 - Python
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