Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update BEDTools version to 2.31.0 #627

Merged
merged 2 commits into from
Jan 24, 2024
Merged

Conversation

VJalili
Copy link
Member

@VJalili VJalili commented Jan 17, 2024

Updating to the current latest version with a static binary included in the release artifacts, v.2.31.9, for a fix for an error reported by Arthur.

The workflow ID used for testing this PR: 10e9cad3-6df3-473c-95b6-a3bf9f9e7268

@mwalker174
Copy link
Collaborator

Thank you @VJalili, I confirmed that the cleaned vcf from your test is bitwise identical to the current main branch.

For posterity, this bug in bedtools caused truncated records greater than 1024 characters long, which could have affected several workflows, particularly where records are annotated with a column containing long sample lists.

@VJalili VJalili merged commit 9debd6d into broadinstitute:main Jan 24, 2024
4 checks passed
@VJalili VJalili deleted the bedtools branch January 24, 2024 18:16
@VJalili
Copy link
Member Author

VJalili commented Jan 24, 2024

Thanks, @mwalker174!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants