ome-zarr
Here are 18 public repositories matching this topic...
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
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Jul 24, 2024 - Python
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.
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Apr 23, 2024 - Python
Main tasks for the Fractal analytics platform
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Aug 14, 2024 - Python
ITK IO for images stored in OME-Zarr format.
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Aug 16, 2024 - C++
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
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Aug 16, 2024 - Python
Large-scale cell segmentation with cellpose.
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May 20, 2024 - Python
Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023
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Nov 2, 2023 - Shell
Run encapsulated docker containers with BioFormats2Raw in the Amazon Web Services infrastructure.
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May 16, 2024 - Python
Fractal tasks for the Opera/Operetta microscope and drug profiling
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Aug 2, 2024 - Python
Python code that I used in my blog posts on the Zarr file format.
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Oct 24, 2022 - Python
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