Assembly and binning of metagenomes

Nanopore sequence read simulator

Training models for basecalling Oxford Nanopore reads

Simple bacterial assembly and annotation pipeline

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Identification of differential RNA modifications from nanopore direct RNA sequencing

Detecting methylation using signal-level features from Nanopore sequencing reads

Nextflow pipeline for analysis of direct RNA Nanopore reads

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

Detecting methylation using signal-level features from Nanopore sequencing reads of plants

Tools and software library developed by the ONT Applications group

Nanopore data analysis in R

DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration

Characterization of Structural Variation in Chinese samples

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

🌺 reference-free transcriptome assembly for short and long reads

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.